{ "type": "genome", "identifier": "GCA_934874985.1", "organism": "uncultured bacterium", "title": "uncultured bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF NEW SOUTH WALES", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934874985.1", "bioproject": "PRJEB50699", "biosample": "SAMEA13567419", "wgs_master": "CAKXGE000000000.1", "refseq_category": "na", "taxid": "77133", "species_taxid": "77133", "organism_name": "uncultured bacterium", "infraspecific_name": "", "isolate": "MTG245_bin.41.fa", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/30", "asm_name": "MTG245_bin.41.fa", "submitter": "UNIVERSITY OF NEW SOUTH WALES", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/874/985/GCA_934874985.1_MTG245_bin.41.fa", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-30", "dateModified": "2022-07-30", "datePublished": "2022-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured bacterium" ], "sample_taxid": [ "77133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.728 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.64, "contamination": 1.04, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2556204", "Number of Sequences": "274", "Longest Sequences (bp)": "55742", "N50 (bp)": "13527", "Gap Ratio (%)": "0.070378", "GCcontent (%)": "44.6", "Number of CDSs": "2056", "Average Protein Length": "328.4", "Coding Ratio (%)": "79.2", "Number of rRNAs": "0", "Number of tRNAs": "18", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hominisplanchenecus faecis", "strain": "strain=CLA-AA-H246", "accession": "GCA_020687205.1", "taxid": 2885351, "species_taxid": 2885351, "relation_to_type": "type", "validated": true, "ani": 98.5301, "matched_fragments": 643, "total_fragments": 709, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_025147765.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 79.3048, "matched_fragments": 92, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_000153905.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 79.2596, "matched_fragments": 90, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter butyricigenes", "strain": "strain=KCTC 15684", "accession": "GCA_003574295.1", "taxid": 2316025, "species_taxid": 2316025, "relation_to_type": "type", "validated": true, "ani": 77.7792, "matched_fragments": 77, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_025152275.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "type", "validated": true, "ani": 77.6982, "matched_fragments": 74, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ramulus", "strain": "strain=ATCC 29099", "accession": "GCA_000469345.1", "taxid": 39490, "species_taxid": 39490, "relation_to_type": "type", "validated": true, "ani": 77.6121, "matched_fragments": 79, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, "relation_to_type": "type", "validated": true, "ani": 77.4353, "matched_fragments": 110, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 77.2836, "matched_fragments": 91, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia massiliensis", "strain": "strain=GD9", "accession": "GCA_001487165.1", "taxid": 1737424, "species_taxid": 1737424, "relation_to_type": "type", "validated": true, "ani": 77.1296, "matched_fragments": 94, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9452, "matched_fragments": 80, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Murimonas intestini", "strain": "strain=DSM 26524", "accession": "GCA_024622195.1", "taxid": 1337051, "species_taxid": 1337051, "relation_to_type": "type", "validated": true, "ani": 76.9388, "matched_fragments": 57, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_002959615.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9223, "matched_fragments": 80, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_000169475.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9085, "matched_fragments": 78, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia caecimuris", "strain": "strain=DSM 29492", "accession": "GCA_024622975.1", "taxid": 1796615, "species_taxid": 1796615, "relation_to_type": "type", "validated": true, "ani": 76.8411, "matched_fragments": 58, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia marasmi", "strain": "strain=Marseille-P2377", "accession": "GCA_900258535.1", "taxid": 1917868, "species_taxid": 1917868, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8258, "matched_fragments": 61, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus gauvreauii", "strain": "strain=DSM 19829", "accession": "GCA_025151995.1", "taxid": 438033, "species_taxid": 438033, "relation_to_type": "type", "validated": true, "ani": 76.5152, "matched_fragments": 52, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus gauvreauii", "strain": "strain=DSM 19829", "accession": "GCA_000425525.1", "taxid": 438033, "species_taxid": 438033, "relation_to_type": "type", "validated": true, "ani": 76.5151, "matched_fragments": 52, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia faecis", "strain": "strain=M72", "accession": "GCA_001406815.1", "taxid": 301302, "species_taxid": 301302, "relation_to_type": "type", "validated": true, "ani": 76.2618, "matched_fragments": 55, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalimonas umbilicata", "strain": "strain=EGH7", "accession": "GCA_003402615.1", "taxid": 1912855, "species_taxid": 1912855, "relation_to_type": "type", "validated": true, "ani": 76.1037, "matched_fragments": 52, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalimonas umbilicata", "strain": "strain=DSM 103426", "accession": "GCA_004346095.1", "taxid": 1912855, "species_taxid": 1912855, "relation_to_type": "type", "validated": true, "ani": 75.968, "matched_fragments": 51, "total_fragments": 709, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 70.64, "contamination": 1.04, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_902363685.1", "gtdb_species": "s__UMGS1375 sp900066615", "ani": 98.488, "matched_fragments": 646, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UMGS1375", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "97.87", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.79", "num_clustered_genomes": 16, "status": "conclusive" }, { "accession": "GCA_900551235.1", "gtdb_species": "s__UMGS1375 sp900551235", "ani": 87.1831, "matched_fragments": 425, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UMGS1375", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905214675.1", "gtdb_species": "s__UMGS1375 sp905214675", "ani": 87.0346, "matched_fragments": 334, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UMGS1375", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000153905.1", "gtdb_species": "s__Blautia_A obeum", "ani": 79.3135, "matched_fragments": 89, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "97.20", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.75", "num_clustered_genomes": 45, "status": "-" }, { "accession": "GCA_902363665.1", "gtdb_species": "s__Choladousia sp902363665", "ani": 78.7288, "matched_fragments": 109, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.59", "min_intra_species_ani": "97.59", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018223435.1", "gtdb_species": "s__Limivivens sp900543575", "ani": 78.0489, "matched_fragments": 100, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Limivivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_905214955.1", "gtdb_species": "s__Limivivens sp905214955", "ani": 77.9585, "matched_fragments": 110, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Limivivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013300725.1", "gtdb_species": "s__Bariatricus comes_A", "ani": 77.8422, "matched_fragments": 87, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Bariatricus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "98.85", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900066355.1", "gtdb_species": "s__Blautia_A sp900066355", "ani": 77.6715, "matched_fragments": 98, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900539525.1", "gtdb_species": "s__CAG-56 sp900539525", "ani": 77.5801, "matched_fragments": 97, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-56", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003481825.1", "gtdb_species": "s__Ventrimonas sp003481825", "ani": 77.528, "matched_fragments": 61, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "98.65", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_014385005.1", "gtdb_species": "s__Marvinbryantia sp014385005", "ani": 77.4353, "matched_fragments": 110, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Marvinbryantia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009883055.1", "gtdb_species": "s__Blautia_A sp900548245", "ani": 77.3661, "matched_fragments": 91, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.37", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_000155875.1", "gtdb_species": "s__Bariatricus comes", "ani": 77.3188, "matched_fragments": 91, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Bariatricus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "97.07", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.76", "num_clustered_genomes": 58, "status": "-" }, { "accession": "GCF_003435815.1", "gtdb_species": "s__CAG-317 sp000433215", "ani": 77.1194, "matched_fragments": 71, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-317", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "98.41", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_008121495.1", "gtdb_species": "s__Ruminococcus_B gnavus", "ani": 76.9452, "matched_fragments": 80, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ruminococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.66", "num_clustered_genomes": 102, "status": "-" }, { "accession": "GCA_900551715.1", "gtdb_species": "s__Blautia_A sp900551715", "ani": 76.5756, "matched_fragments": 69, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900541985.1", "gtdb_species": "s__Blautia_A sp900541985", "ani": 76.5536, "matched_fragments": 72, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Hominisplanchenecus", "s__Hominisplanchenecus faecis" ], "_genome_taxon": [ "uncultured", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Hominisplanchenecus", "s__Hominisplanchenecus faecis", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Hominisplanchenecus", "Hominisplanchenecus", "faecis" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }