{
    "type": "genome",
    "identifier": "GCA_934883125.1",
    "organism": "Clostridium sp. AF36-4",
    "title": "Clostridium sp. AF36-4",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF NEW SOUTH WALES",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934883125.1",
        "bioproject": "PRJEB50699",
        "biosample": "SAMEA13567464",
        "wgs_master": "CAKXWP000000000.1",
        "refseq_category": "na",
        "taxid": "2293015",
        "species_taxid": "2293015",
        "organism_name": "Clostridium sp. AF36-4",
        "infraspecific_name": "",
        "isolate": "MTG246_bin.39.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/30",
        "asm_name": "MTG246_bin.39.fa",
        "submitter": "UNIVERSITY OF NEW SOUTH WALES",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/883/125/GCA_934883125.1_MTG246_bin.39.fa",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-30",
    "dateModified": "2022-07-30",
    "datePublished": "2022-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridium sp. AF36-4"
        ],
        "sample_taxid": [
            "2293015"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.802 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2816701",
        "Number of Sequences": "164",
        "Longest Sequences (bp)": "340754",
        "N50 (bp)": "55482",
        "Gap Ratio (%)": "0.012781",
        "GCcontent (%)": "41.1",
        "Number of CDSs": "2528",
        "Average Protein Length": "324.4",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Roseburia intestinalis",
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                "accession": "GCA_000156535.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3271,
                "matched_fragments": 60,
                "total_fragments": 872,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_025152405.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2677,
                "matched_fragments": 55,
                "total_fragments": 872,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jutongia huaianensis",
                "strain": "strain=NSJ-37",
                "accession": "GCA_014384985.1",
                "taxid": 2763668,
                "species_taxid": 2763668,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.228,
                "matched_fragments": 66,
                "total_fragments": 872,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jutongia hominis",
                "strain": "strain=BX3",
                "accession": "GCA_014384965.1",
                "taxid": 2763664,
                "species_taxid": 2763664,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6809,
                "matched_fragments": 64,
                "total_fragments": 872,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_003477605.1",
                "gtdb_species": "s__Eubacterium_F sp003491505",
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                "matched_fragments": 737,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.02",
                "min_intra_species_ani": "96.96",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 18,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000434115.1",
                "gtdb_species": "s__Eubacterium_F sp000434115",
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                "matched_fragments": 159,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_905212635.1",
                "gtdb_species": "s__Eubacterium_F sp905212635",
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                "matched_fragments": 162,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_002431395.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000433735.1",
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                "matched_fragments": 150,
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                "mean_intra_species_ani": "98.51",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002435545.1",
                "gtdb_species": "s__Eubacterium_F sp002435545",
                "ani": 77.8973,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
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            {
                "accession": "GCA_910577295.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_910589595.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_900319095.1",
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                "matched_fragments": 99,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_F",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_F",
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                "mean_intra_species_ani": "N/A",
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            {
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            },
            {
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                "matched_fragments": 54,
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                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCA_017437065.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__RGIG3002",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.16,
        "cell_length": 0.434,
        "doubling_h": 0.353,
        "growth_tmp": 33.457,
        "optimum_tmp": 35.173,
        "optimum_ph": 6.947,
        "genome_size": 4165901.003,
        "gc_content": 29.49,
        "coding_genes": 3796.985,
        "rRNA16S_genes": 9.374,
        "tRNA_genes": 78.312,
        "gram_stain": 0.945,
        "sporulation": 0.967,
        "motility": 0.92,
        "range_salinity": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.944,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Lachnospiraceae",
        "g__Eubacterium_F",
        "s__Eubacterium_F sp003491505"
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    "_genome_taxon": [
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        "sp.",
        "AF36-4",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Eubacterium_F",
        "s__Eubacterium_F sp003491505",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Eubacterium",
        "F",
        "Eubacterium",
        "F",
        "sp003491505"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}