{
    "type": "genome",
    "identifier": "GCA_936916975.1",
    "organism": "uncultured Dongia sp.",
    "title": "uncultured Dongia sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_936916975.1",
        "bioproject": "PRJEB51079",
        "biosample": "SAMEA13911881",
        "wgs_master": "CAKZGO000000000.1",
        "refseq_category": "na",
        "taxid": "1208328",
        "species_taxid": "1208328",
        "organism_name": "uncultured Dongia sp.",
        "infraspecific_name": "",
        "isolate": "ERR2114811_bin.4_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/12",
        "asm_name": "ERR2114811_bin.4_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/936/916/975/GCA_936916975.1_ERR2114811_bin.4_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-12",
    "dateModified": "2023-01-12",
    "datePublished": "2023-01-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Dongia sp."
        ],
        "sample_taxid": [
            "1208328"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands"
        ],
        "sample_host_location_id": [],
        "data_size": "1.535 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5477478",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "917022",
        "N50 (bp)": "212027",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.5",
        "Number of CDSs": "5043",
        "Average Protein Length": "326.3",
        "Coding Ratio (%)": "90.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Dongia mobilis",
                "strain": "strain=CGMCC 1.7660",
                "accession": "GCA_004363235.1",
                "taxid": 578943,
                "species_taxid": 578943,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1897,
                "matched_fragments": 851,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hypericibacter adhaerens",
                "strain": "strain=R5959",
                "accession": "GCA_008728835.1",
                "taxid": 2602016,
                "species_taxid": 2602016,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3874,
                "matched_fragments": 390,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hypericibacter terrae",
                "strain": "strain=R5913",
                "accession": "GCA_008728855.1",
                "taxid": 2602015,
                "species_taxid": 2602015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2081,
                "matched_fragments": 382,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum moscoviense",
                "strain": "strain=BB-1",
                "accession": "GCA_001650635.1",
                "taxid": 1437059,
                "species_taxid": 1437059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.93,
                "matched_fragments": 168,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanibaculum nanhaiense",
                "strain": "strain=L54-1-50",
                "accession": "GCA_002148795.1",
                "taxid": 1909734,
                "species_taxid": 1909734,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6565,
                "matched_fragments": 211,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanibaculum pacificum",
                "strain": "strain=MCCC 1A02656",
                "accession": "GCA_001618175.1",
                "taxid": 580166,
                "species_taxid": 580166,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5402,
                "matched_fragments": 195,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum thiophilum",
                "strain": "strain=DSM 21654",
                "accession": "GCA_000960825.1",
                "taxid": 528244,
                "species_taxid": 528244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5232,
                "matched_fragments": 247,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum thiophilum",
                "strain": "strain=BV-S",
                "accession": "GCA_001305595.1",
                "taxid": 528244,
                "species_taxid": 528244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4763,
                "matched_fragments": 252,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum palustre",
                "strain": "strain=B2",
                "accession": "GCA_002573965.1",
                "taxid": 2044885,
                "species_taxid": 2044885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3964,
                "matched_fragments": 291,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Inquilinus limosus",
                "strain": "strain=DSM 16000",
                "accession": "GCA_000423185.1",
                "taxid": 171674,
                "species_taxid": 171674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3299,
                "matched_fragments": 295,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kaistia soli",
                "strain": "strain=DSM 19436",
                "accession": "GCA_900129325.1",
                "taxid": 446684,
                "species_taxid": 446684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2523,
                "matched_fragments": 156,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oricola indica",
                "strain": "strain=JL-62",
                "accession": "GCA_019966595.1",
                "taxid": 2872591,
                "species_taxid": 2872591,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2114,
                "matched_fragments": 117,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum rugosum",
                "strain": "strain=IMMIB AFH-6",
                "accession": "GCA_017876155.1",
                "taxid": 416170,
                "species_taxid": 416170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1216,
                "matched_fragments": 243,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Skermanella aerolata",
                "strain": "strain=5416T-32",
                "accession": "GCA_000936425.1",
                "taxid": 393310,
                "species_taxid": 393310,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1141,
                "matched_fragments": 220,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus aminovorans",
                "strain": "",
                "accession": "GCA_900005615.1",
                "taxid": 34004,
                "species_taxid": 34004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1135,
                "matched_fragments": 145,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum soli",
                "strain": "strain=CC-LY788",
                "accession": "GCA_017876165.1",
                "taxid": 1304799,
                "species_taxid": 1304799,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0959,
                "matched_fragments": 222,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus aminovorans",
                "strain": "strain=DSM 8537",
                "accession": "GCA_900113565.1",
                "taxid": 34004,
                "species_taxid": 34004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0796,
                "matched_fragments": 143,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum halopraeferens",
                "strain": "strain=DSM 3675",
                "accession": "GCA_000429625.1",
                "taxid": 34010,
                "species_taxid": 34010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0078,
                "matched_fragments": 208,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microvirga aerophila",
                "strain": "strain=DSM 21344",
                "accession": "GCA_003332305.1",
                "taxid": 670291,
                "species_taxid": 670291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9735,
                "matched_fragments": 100,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum oleiclasticum",
                "strain": "strain=RWY-5-1-1",
                "accession": "GCA_013423485.1",
                "taxid": 2735135,
                "species_taxid": 2735135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9363,
                "matched_fragments": 234,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidibrevibacterium fodinaquatile",
                "strain": "strain=G45-3",
                "accession": "GCA_003352165.1",
                "taxid": 1969806,
                "species_taxid": 1969806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9288,
                "matched_fragments": 117,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microvirga aerophila",
                "strain": "strain=NBRC 106136",
                "accession": "GCA_007991675.1",
                "taxid": 670291,
                "species_taxid": 670291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8913,
                "matched_fragments": 101,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microvirga lenta",
                "strain": "strain=SM9",
                "accession": "GCA_020532555.1",
                "taxid": 2881337,
                "species_taxid": 2881337,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8607,
                "matched_fragments": 121,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelagibacterium xiamenense",
                "strain": "strain=HS1C4-1",
                "accession": "GCA_021166475.1",
                "taxid": 2901140,
                "species_taxid": 2901140,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8058,
                "matched_fragments": 79,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter azotoformans",
                "strain": "strain=KA25",
                "accession": "GCA_003050905.1",
                "taxid": 43057,
                "species_taxid": 43057,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7923,
                "matched_fragments": 115,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016712715.1",
                "gtdb_species": "s__Dongia sp016712715",
                "ani": 84.7485,
                "matched_fragments": 1188,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__Dongia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016183985.1",
                "gtdb_species": "s__Dongia sp016183985",
                "ani": 81.3963,
                "matched_fragments": 1050,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__Dongia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016794165.1",
                "gtdb_species": "s__Dongia sp016794165",
                "ani": 80.3844,
                "matched_fragments": 693,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__Dongia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004363235.1",
                "gtdb_species": "s__Dongia mobilis",
                "ani": 80.1911,
                "matched_fragments": 850,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__Dongia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_008012315.1",
                "gtdb_species": "s__SSEL01 sp008012315",
                "ani": 77.9963,
                "matched_fragments": 440,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__SSEL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013822765.1",
                "gtdb_species": "s__SYSU-D60009 sp013822765",
                "ani": 77.9687,
                "matched_fragments": 497,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__SYSU-D60009",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016794075.1",
                "gtdb_species": "s__SYSU-D60009 sp016794075",
                "ani": 77.8573,
                "matched_fragments": 340,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__SYSU-D60009",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000620685.1",
                "gtdb_species": "s__Dongia sp000620685",
                "ani": 77.7211,
                "matched_fragments": 475,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__Dongia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900184795.1",
                "gtdb_species": "s__Phaeospirillum sp900184795",
                "ani": 76.2804,
                "matched_fragments": 171,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900129325.1",
                "gtdb_species": "s__Kaistia soli",
                "ani": 76.2746,
                "matched_fragments": 154,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900005615.1",
                "gtdb_species": "s__Paracoccus aminovorans",
                "ani": 76.1032,
                "matched_fragments": 146,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003952665.1",
                "gtdb_species": "s__Bosea sp003952665",
                "ani": 75.9652,
                "matched_fragments": 201,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Bosea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019240395.1",
                "gtdb_species": "s__JAFAYA01 sp019240395",
                "ani": 75.8109,
                "matched_fragments": 120,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__JAFAYA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": -0.222,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 32.5,
        "optimum_ph": 7.25,
        "genome_size": 4189767.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Dongiales",
        "f__Dongiaceae",
        "g__Dongia",
        "s__Dongia sp936916975"
    ],
    "_genome_taxon": [
        "uncultured",
        "Dongia",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Dongiales",
        "f__Dongiaceae",
        "g__Dongia",
        "s__Dongia sp936916975",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Dongiales",
        "Dongiaceae",
        "Dongia",
        "Dongia",
        "sp936916975"
    ],
    "_meo": [
        {
            "id": "MEO_0000419",
            "label": "plant body associated"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}