{ "type": "genome", "identifier": "GCA_936933935.1", "organism": "Lysobacter tolerans", "title": "Lysobacter tolerans", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_936933935.1", "bioproject": "PRJEB51076", "biosample": "SAMEA13902912", "wgs_master": "CAKZIM000000000.1", "refseq_category": "na", "taxid": "1604334", "species_taxid": "1604334", "organism_name": "Lysobacter tolerans", "infraspecific_name": "", "isolate": "SRR6145099_bin.27_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR6145099_bin.27_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/936/933/935/GCA_936933935.1_SRR6145099_bin.27_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter tolerans" ], "sample_taxid": [ "1604334" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hong Kong" ], "sample_host_location_id": [], "data_size": "0.837 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.01, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2954912", "Number of Sequences": "208", "Longest Sequences (bp)": "120551", "N50 (bp)": "35771", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "2743", "Average Protein Length": "304.3", "Coding Ratio (%)": "84.7", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter tolerans", "strain": "strain=UM1", "accession": "GCA_900155935.1", "taxid": 1604334, "species_taxid": 1604334, "relation_to_type": "type", "validated": true, "ani": 98.7421, "matched_fragments": 722, "total_fragments": 873, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter oculi", "strain": "strain=83-4", "accession": "GCA_003293695.1", "taxid": 2698682, "species_taxid": 2698682, "relation_to_type": "type", "validated": true, "ani": 82.4946, "matched_fragments": 561, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter pythonis", "strain": "strain=4284/11", "accession": "GCA_003697345.1", "taxid": 2483112, "species_taxid": 2483112, "relation_to_type": "type", "validated": true, "ani": 79.5632, "matched_fragments": 406, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 79.4688, "matched_fragments": 347, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas fusca", "strain": "strain=DSM 15424", "accession": "GCA_000423885.1", "taxid": 215690, "species_taxid": 215690, "relation_to_type": "type", "validated": true, "ani": 79.1811, "matched_fragments": 311, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter terrestris", "strain": "strain=II4", "accession": "GCA_014489475.1", "taxid": 2865112, "species_taxid": 2865112, "relation_to_type": "type", "validated": true, "ani": 79.1283, "matched_fragments": 306, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvestris", "strain": "strain=AM20-91", "accession": "GCA_002895945.1", "taxid": 1645665, "species_taxid": 1645665, "relation_to_type": "type", "validated": true, "ani": 79.0411, "matched_fragments": 297, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aestuarii", "strain": "strain=B9", "accession": "GCA_004357985.1", "taxid": 453837, "species_taxid": 453837, "relation_to_type": "type", "validated": true, "ani": 79.0207, "matched_fragments": 308, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas marina", "strain": "strain=FR1330", "accession": "GCA_007859325.1", "taxid": 488485, "species_taxid": 488485, "relation_to_type": "type", "validated": true, "ani": 78.866, "matched_fragments": 318, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas haemolytica", "strain": "strain=DSM 13605", "accession": "GCA_004346265.1", "taxid": 141949, "species_taxid": 141949, "relation_to_type": "type", "validated": true, "ani": 78.8419, "matched_fragments": 301, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas panaciterrae", "strain": "strain=Gsoil 068", "accession": "GCA_020511115.1", "taxid": 363885, "species_taxid": 363885, "relation_to_type": "type", "validated": true, "ani": 78.8068, "matched_fragments": 277, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas haemolytica", "strain": "strain=LMG 19653", "accession": "GCA_006352395.1", "taxid": 141949, "species_taxid": 141949, "relation_to_type": "type", "validated": true, "ani": 78.8045, "matched_fragments": 292, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 78.773, "matched_fragments": 307, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas gilva", "strain": "strain=H23", "accession": "GCA_005239095.1", "taxid": 2572684, "species_taxid": 2572684, "relation_to_type": "type", "validated": true, "ani": 78.694, "matched_fragments": 302, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas helianthi", "strain": "strain=110414", "accession": "GCA_017939625.1", "taxid": 1453541, "species_taxid": 1453541, "relation_to_type": "type", "validated": true, "ani": 78.6542, "matched_fragments": 295, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter spongiae", "strain": "strain=119BY6-57", "accession": "GCA_014145325.1", "taxid": 2025720, "species_taxid": 2025720, "relation_to_type": "type", "validated": true, "ani": 78.5031, "matched_fragments": 291, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas saliphila", "strain": "strain=SJ-9", "accession": "GCA_016774335.1", "taxid": 2804919, "species_taxid": 2804919, "relation_to_type": "type", "validated": true, "ani": 78.4845, "matched_fragments": 298, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas viscosa", "strain": "strain=XBU10", "accession": "GCA_008244685.1", "taxid": 1132694, "species_taxid": 1132694, "relation_to_type": "type", "validated": true, "ani": 78.4295, "matched_fragments": 294, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter segetis", "strain": "strain=17J68-2", "accession": "GCA_004359965.1", "taxid": 2492394, "species_taxid": 2492394, "relation_to_type": "type", "validated": true, "ani": 78.2482, "matched_fragments": 257, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.01, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900155935.1", "gtdb_species": "s__Lysobacter_B tolerans", "ani": 98.716, "matched_fragments": 723, "total_fragments": 873, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_014879375.1", "gtdb_species": "s__Lysobacter_B sp014879375", "ani": 83.5531, 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