{ "type": "genome", "identifier": "GCA_936940875.1", "organism": "Staphylococcus auricularis", "title": "Staphylococcus auricularis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_936940875.1", "bioproject": "PRJEB51076", "biosample": "SAMEA13902850", "wgs_master": "CAKZJA000000000.1", "refseq_category": "na", "taxid": "29379", "species_taxid": "29379", "organism_name": "Staphylococcus auricularis", "infraspecific_name": "", "isolate": "SRR1621010_bin.14_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR1621010_bin.14_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/936/940/875/GCA_936940875.1_SRR1621010_bin.14_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Staphylococcus auricularis" ], "sample_taxid": [ "29379" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.633 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2231640", "Number of Sequences": "23", "Longest Sequences (bp)": "315309", "N50 (bp)": "206533", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.1", "Number of CDSs": "2171", "Average Protein Length": "289.0", "Coding Ratio (%)": "84.3", "Number of rRNAs": "1", "Number of tRNAs": "26", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Staphylococcus auricularis", "strain": "strain=NCTC12101", "accession": "GCA_900478415.1", "taxid": 29379, "species_taxid": 29379, "relation_to_type": "type", "validated": true, "ani": 99.649, "matched_fragments": 712, "total_fragments": 735, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Staphylococcus auricularis", "strain": "strain=DSM 20609", "accession": "GCA_001500315.1", "taxid": 29379, "species_taxid": 29379, "relation_to_type": "type", "validated": true, "ani": 99.6199, "matched_fragments": 704, "total_fragments": 735, "ani_threshold": 95, "status": 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haemolyticus", "strain": "strain=NCTC 11042", "accession": "GCA_002901805.1", "taxid": 1283, "species_taxid": 1283, "relation_to_type": "type", "validated": true, "ani": 78.375, "matched_fragments": 184, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus croceilyticus", "strain": "strain=CCUG 62728", "accession": "GCA_002902575.1", "taxid": 319942, "species_taxid": 319942, "relation_to_type": "type", "validated": true, "ani": 78.3726, "matched_fragments": 200, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus taiwanensis", "strain": "strain=NTUH-S172", "accession": "GCA_020544305.1", "taxid": 2750012, "species_taxid": 2750012, "relation_to_type": "type", "validated": true, "ani": 78.3587, "matched_fragments": 188, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus saprophyticus", "strain": "strain=NCTC7292", 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1280, "species_taxid": 1280, "relation_to_type": "type", "validated": true, "ani": 77.9539, "matched_fragments": 185, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus aureus", "strain": "strain=NCTC 08532", "accession": "GCA_002902205.1", "taxid": 1280, "species_taxid": 1280, "relation_to_type": "type", "validated": true, "ani": 77.9355, "matched_fragments": 187, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus schleiferi", "strain": "strain=NCTC12218", "accession": "GCA_900458895.2", "taxid": 1295, "species_taxid": 1295, "relation_to_type": "type", "validated": true, "ani": 77.6951, "matched_fragments": 131, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001500315.1", "gtdb_species": "s__Staphylococcus 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