{ "type": "genome", "identifier": "GCA_937129435.1", "organism": "uncultured Parasphingopyxis sp.", "title": "uncultured Parasphingopyxis sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937129435.1", "bioproject": "PRJEB51071", "biosample": "SAMEA13959081", "wgs_master": "CAKZNF000000000.1", "refseq_category": "na", "taxid": "1547918", "species_taxid": "1547918", "organism_name": "uncultured Parasphingopyxis sp.", "infraspecific_name": "", "isolate": "ERR2094164_bin.85_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "ERR2094164_bin.85_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/129/435/GCA_937129435.1_ERR2094164_bin.85_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Parasphingopyxis sp." ], "sample_taxid": [ "1547918" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.843 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 90.28, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3025346", "Number of Sequences": "93", "Longest Sequences (bp)": "154679", "N50 (bp)": "48672", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.9", "Number of CDSs": "2945", "Average Protein Length": "300.3", "Coding Ratio (%)": "87.7", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parasphingopyxis marina", "strain": "strain=GrpM-11", "accession": "GCA_014237875.1", "taxid": 2761622, "species_taxid": 2761622, "relation_to_type": "type", "validated": true, "ani": 80.1078, "matched_fragments": 545, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parasphingopyxis algicola", "strain": "strain=JCM 31719", "accession": "GCA_013378075.1", "taxid": 2026624, "species_taxid": 2026624, "relation_to_type": "type", "validated": true, "ani": 80.031, "matched_fragments": 545, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parasphingopyxis lamellibrachiae", "strain": "strain=DSM 26725", "accession": "GCA_003385775.1", "taxid": 680125, "species_taxid": 680125, "relation_to_type": "type", "validated": true, "ani": 78.2361, "matched_fragments": 411, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella ginsenosidimutans", "strain": "strain=BS-11", "accession": "GCA_007995055.1", "taxid": 1176539, "species_taxid": 1176539, "relation_to_type": "type", "validated": true, "ani": 78.0852, "matched_fragments": 308, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas mali", "strain": "strain=NBRC 15500", "accession": "GCA_001598415.1", "taxid": 40682, "species_taxid": 40682, "relation_to_type": "type", "validated": true, "ani": 78.0003, "matched_fragments": 293, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas naasensis", "strain": "strain=KIS18-15", "accession": "GCA_004792695.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 77.9721, "matched_fragments": 333, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas baiyangensis", "strain": "strain=L-1-4 w-11", "accession": "GCA_005144715.1", "taxid": 2572576, "species_taxid": 2572576, "relation_to_type": "type", "validated": true, "ani": 77.9285, "matched_fragments": 296, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas naasensis", "strain": "strain=DSM 100060", "accession": "GCA_011762145.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 77.9193, "matched_fragments": 343, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 77.9177, "matched_fragments": 313, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas suaedae", "strain": "strain=XS-10", "accession": "GCA_007833215.1", "taxid": 2599297, "species_taxid": 2599297, "relation_to_type": "type", "validated": true, "ani": 77.8377, "matched_fragments": 298, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas colocasiae", "strain": "strain=JCM 31229", "accession": "GCA_019880585.1", "taxid": 1848973, "species_taxid": 1848973, "relation_to_type": "type", "validated": true, "ani": 77.8372, "matched_fragments": 378, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas laterariae", "strain": "strain=LNB2", "accession": "GCA_900188165.1", "taxid": 861865, "species_taxid": 861865, "relation_to_type": "type", "validated": true, "ani": 77.7875, "matched_fragments": 305, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella humi", "strain": "strain=QZX222", "accession": "GCA_003129465.1", "taxid": 2068657, "species_taxid": 2068657, "relation_to_type": "type", "validated": true, "ani": 77.7506, "matched_fragments": 296, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizorhabdus phycosphaerae", "strain": "strain=MK52", "accession": "GCA_011044255.1", "taxid": 2711156, "species_taxid": 2711156, "relation_to_type": "type", "validated": true, "ani": 77.7349, "matched_fragments": 266, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas oligoaromativorans", "strain": "strain=DSM 102246", "accession": "GCA_011762195.1", "taxid": 575322, "species_taxid": 575322, "relation_to_type": "type", "validated": true, "ani": 77.717, "matched_fragments": 269, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas abaci", "strain": "strain=DSM 15867", "accession": "GCA_014199625.1", "taxid": 237611, "species_taxid": 237611, "relation_to_type": "type", "validated": true, "ani": 77.6636, "matched_fragments": 271, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 77.6114, "matched_fragments": 287, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas chungangi", "strain": "strain=CGMCC 1.13654", "accession": "GCA_013778325.1", "taxid": 2683589, "species_taxid": 2683589, "relation_to_type": "type", "validated": true, "ani": 77.5896, "matched_fragments": 296, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomicrobium aestuariivivum", "strain": "strain=KCTC 42286", "accession": "GCA_022953075.1", "taxid": 1582356, "species_taxid": 1582356, "relation_to_type": "type", "validated": true, "ani": 77.5015, "matched_fragments": 226, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomicrobium aestuariivivum", "strain": "strain=KCTC 42286", "accession": "GCA_024721585.1", "taxid": 1582356, "species_taxid": 1582356, "relation_to_type": "type", "validated": true, "ani": 77.4899, "matched_fragments": 222, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas yabuuchiae", "strain": "strain=DSM 14562", "accession": "GCA_017052455.1", "taxid": 172044, "species_taxid": 172044, "relation_to_type": "type", "validated": true, "ani": 77.4616, "matched_fragments": 280, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, "relation_to_type": "type", "validated": true, "ani": 77.455, "matched_fragments": 274, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium chungbukense", "strain": "strain=DJ77", "accession": "GCA_001005725.1", "taxid": 56193, "species_taxid": 56193, "relation_to_type": "type", "validated": true, "ani": 77.3891, "matched_fragments": 240, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=CCM 7327", "accession": "GCA_014636045.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 77.3262, "matched_fragments": 259, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=DSM 18781", "accession": "GCA_004152845.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 77.3037, "matched_fragments": 256, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella amylolytica", "strain": "strain=NS1", "accession": "GCA_003626915.1", "taxid": 2338327, "species_taxid": 2338327, "relation_to_type": "type", "validated": true, "ani": 77.225, "matched_fragments": 222, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium terrigena", "strain": "strain=EO9", "accession": "GCA_003591655.1", "taxid": 2304063, "species_taxid": 2304063, "relation_to_type": "type", "validated": true, "ani": 77.1606, "matched_fragments": 242, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium limneticum", "strain": "strain=DSM 25076", "accession": "GCA_008710155.1", "taxid": 1007511, "species_taxid": 1007511, "relation_to_type": "type", "validated": true, "ani": 77.0786, "matched_fragments": 235, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium marinum", "strain": "strain=CGMCC 1.12918", "accession": "GCA_014640055.1", "taxid": 1514948, "species_taxid": 1514948, "relation_to_type": "type", "validated": true, "ani": 77.0403, "matched_fragments": 203, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus sediminis", "strain": "strain=S2-4-2", "accession": "GCA_007570835.1", "taxid": 2571150, "species_taxid": 2571150, "relation_to_type": "type", "validated": true, "ani": 76.8793, "matched_fragments": 167, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus halophilus", "strain": "strain=JCM 14014", "accession": "GCA_000763905.1", "taxid": 376733, "species_taxid": 376733, "relation_to_type": "type", "validated": true, "ani": 75.5896, "matched_fragments": 86, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 90.28, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014237875.1", "gtdb_species": "s__Parasphingopyxis sp014237875", "ani": 80.0771, "matched_fragments": 548, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingopyxis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013378075.1", "gtdb_species": "s__Parasphingopyxis algicola", "ani": 80.0362, 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