{ "type": "genome", "identifier": "GCA_937862785.1", "organism": "uncultured Desulfomicrobium sp.", "title": "uncultured Desulfomicrobium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937862785.1", "bioproject": "PRJEB51074", "biosample": "SAMEA14036409", "wgs_master": "CALMDQ000000000.1", "refseq_category": "na", "taxid": "348146", "species_taxid": "348146", "organism_name": "uncultured Desulfomicrobium sp.", "infraspecific_name": "", "isolate": "SRR8868559_bin.55_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR8868559_bin.55_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/862/785/GCA_937862785.1_SRR8868559_bin.55_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Desulfomicrobium sp." ], "sample_taxid": [ "348146" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "0.695 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.79, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2446600", "Number of Sequences": "354", "Longest Sequences (bp)": "37769", "N50 (bp)": "9370", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "2042", "Average Protein Length": "297.6", "Coding Ratio (%)": "74.5", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfomicrobium escambiense", "strain": "strain=DSM 10707", "accession": "GCA_000428825.1", "taxid": 29503, "species_taxid": 29503, "relation_to_type": "type", "validated": true, "ani": 80.7379, "matched_fragments": 423, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium baculatum", "strain": "strain=DSM 4028", "accession": "GCA_000023225.1", "taxid": 899, "species_taxid": 899, "relation_to_type": "type", "validated": true, "ani": 79.5441, "matched_fragments": 358, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium apsheronum", "strain": "strain=DSM 5918", "accession": "GCA_900114115.1", "taxid": 52560, "species_taxid": 52560, "relation_to_type": "type", "validated": true, "ani": 79.3357, "matched_fragments": 370, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium orale", "strain": "strain=DSM 12838", "accession": "GCA_001553625.1", "taxid": 132132, "species_taxid": 132132, "relation_to_type": "type", "validated": true, "ani": 77.9668, "matched_fragments": 209, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio sulfodismutans", "strain": "strain=DSM 3696", "accession": "GCA_013376455.1", "taxid": 63561, "species_taxid": 63561, "relation_to_type": "type", "validated": true, "ani": 76.5681, "matched_fragments": 73, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio hydrargyri", "strain": "strain=BerOc1", "accession": "GCA_001874525.1", "taxid": 2125990, "species_taxid": 2125990, "relation_to_type": "type", "validated": true, "ani": 76.4994, "matched_fragments": 89, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=J2", "accession": "GCA_001563225.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 76.3092, "matched_fragments": 100, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio carbinolicus", "strain": "strain=DSM 3852", "accession": "GCA_004135975.1", "taxid": 296842, "species_taxid": 296842, "relation_to_type": "type", "validated": true, "ani": 76.2586, "matched_fragments": 83, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio aespoeensis", "strain": "strain=Aspo-2", "accession": "GCA_000176915.2", "taxid": 182210, "species_taxid": 182210, "relation_to_type": "type", "validated": true, "ani": 76.2432, "matched_fragments": 72, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio carbinoliphilus subsp. oakridgensis", "strain": "strain=FW-101-2B", "accession": "GCA_000177215.2", "taxid": 694327, "species_taxid": 345370, "relation_to_type": "type", "validated": true, "ani": 76.2214, "matched_fragments": 71, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfonatronum lacustre", "strain": "strain=DSM 10312", "accession": "GCA_000519265.1", "taxid": 66849, "species_taxid": 66849, "relation_to_type": "type", "validated": true, "ani": 76.104, "matched_fragments": 68, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 78.79, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_012729655.1", "gtdb_species": "s__Desulfomicrobium sp012729655", "ani": 99.2788, "matched_fragments": 553, "total_fragments": 636, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfomicrobiaceae;g__Desulfomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000428825.1", "gtdb_species": "s__Desulfomicrobium escambiense", "ani": 80.7287, "matched_fragments": 424, "total_fragments": 636, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfomicrobiaceae;g__Desulfomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": 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