{ "type": "genome", "identifier": "GCA_937862815.1", "organism": "uncultured Chitinophagaceae bacterium", "title": "uncultured Chitinophagaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937862815.1", "bioproject": "PRJEB51080", "biosample": "SAMEA14036561", "wgs_master": "CALMED000000000.1", "refseq_category": "na", "taxid": "866510", "species_taxid": "866510", "organism_name": "uncultured Chitinophagaceae bacterium", "infraspecific_name": "", "isolate": "SRR2107179_bin.41_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "SRR2107179_bin.41_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/862/815/GCA_937862815.1_SRR2107179_bin.41_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Chitinophagaceae bacterium" ], "sample_taxid": [ "866510" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Argentina" ], "sample_host_location_id": [], "data_size": "1.104 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3888174", "Number of Sequences": "47", "Longest Sequences (bp)": "822111", "N50 (bp)": "168612", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.6", "Number of CDSs": "3240", "Average Protein Length": "354.3", "Coding Ratio (%)": "88.6", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flaviaesturariibacter aridisoli", "strain": "strain=17J68-15", "accession": "GCA_004343705.1", "taxid": 2545761, "species_taxid": 2545761, "relation_to_type": "type", "validated": true, "ani": 76.4719, "matched_fragments": 109, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium ginsengisoli", "strain": "strain=DSM 22335", "accession": "GCA_900167075.1", "taxid": 413434, "species_taxid": 413434, "relation_to_type": "type", "validated": true, "ani": 76.3483, "matched_fragments": 51, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phnomibacter ginsenosidimutans", "strain": "strain=SB-02", "accession": "GCA_009740285.1", "taxid": 2676868, "species_taxid": 2676868, "relation_to_type": "type", "validated": true, "ani": 76.3322, "matched_fragments": 95, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flaviaesturariibacter flavus", "strain": "strain=17J68-12", "accession": "GCA_004337505.1", "taxid": 2502780, "species_taxid": 2502780, "relation_to_type": "type", "validated": true, "ani": 76.2306, "matched_fragments": 101, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter rivuli", "strain": "strain=IMCC34838", "accession": "GCA_018595685.2", "taxid": 2838156, "species_taxid": 2838156, "relation_to_type": "type", "validated": true, "ani": 76.2175, "matched_fragments": 87, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavisolibacter nicotianae", "strain": "strain=X7X", "accession": "GCA_003628535.1", "taxid": 2364882, "species_taxid": 2364882, "relation_to_type": "type", "validated": true, "ani": 76.1986, "matched_fragments": 109, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=GR20-10", "accession": "GCA_000246855.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 76.1646, "matched_fragments": 82, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavisolibacter ginsenosidimutans", "strain": "strain=Gsoil 636", "accession": "GCA_007970805.1", "taxid": 661481, "species_taxid": 661481, "relation_to_type": "type", "validated": true, "ani": 76.0648, "matched_fragments": 59, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga japonensis", "strain": "strain=DSM 13484", "accession": "GCA_007830125.1", "taxid": 104662, "species_taxid": 104662, "relation_to_type": "type", "validated": true, "ani": 75.9571, "matched_fragments": 81, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium soli", "strain": "strain=WSJ-3", "accession": "GCA_009939225.1", "taxid": 2698829, "species_taxid": 2698829, "relation_to_type": "type", "validated": true, "ani": 75.9264, "matched_fragments": 90, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_002077935.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 75.9183, "matched_fragments": 66, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=DSM 17620", "accession": "GCA_002077985.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 75.8753, "matched_fragments": 76, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puia dinghuensis", "strain": "strain=CGMCC 1.15448", "accession": "GCA_014642875.1", "taxid": 1792502, "species_taxid": 1792502, "relation_to_type": "type", "validated": true, "ani": 75.8555, "matched_fragments": 75, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella caeni", "strain": "strain=HX-16-21", "accession": "GCA_004834005.1", "taxid": 2569763, "species_taxid": 2569763, "relation_to_type": "type", "validated": true, "ani": 75.8461, "matched_fragments": 64, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga lutea", "strain": "strain=ZY74", "accession": "GCA_003813775.1", "taxid": 2488634, "species_taxid": 2488634, "relation_to_type": "type", "validated": true, "ani": 75.784, "matched_fragments": 79, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga chungangae", "strain": "strain=MAH-28", "accession": "GCA_017742215.1", "taxid": 2821488, "species_taxid": 2821488, "relation_to_type": "type", "validated": true, "ani": 75.698, "matched_fragments": 89, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_900110245.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 75.692, "matched_fragments": 64, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_014168535.1", "gtdb_species": "s__Lacibacter sp014168535", "ani": 76.8484, "matched_fragments": 90, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Lacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002337125.1", "gtdb_species": "s__Lacibacter sp002337125", "ani": 76.8426, "matched_fragments": 90, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Lacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016713085.1", "gtdb_species": "s__Lacibacter sp016713085", "ani": 76.7482, "matched_fragments": 81, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Lacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017303335.1", "gtdb_species": "s__Ferruginibacter sp017303335", "ani": 76.5785, "matched_fragments": 114, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.06", "min_intra_species_ani": "98.06", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004343705.1", "gtdb_species": "s__Flaviaesturariibacter aridisoli", "ani": 76.4882, "matched_fragments": 108, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flaviaesturariibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009740285.1", "gtdb_species": "s__Phnomibacter ginsenosidimutans", "ani": 76.4873, "matched_fragments": 95, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Phnomibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009939005.1", "gtdb_species": "s__Sediminibacterium roseum", "ani": 76.4151, "matched_fragments": 56, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004337505.1", "gtdb_species": "s__Flaviaesturariibacter flavus", "ani": 76.2406, "matched_fragments": 101, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flaviaesturariibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016219985.1", "gtdb_species": "s__JJ008 sp016219985", "ani": 76.197, "matched_fragments": 99, "total_fragments": 1272, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.76", "min_intra_species_ani": "98.76", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007970805.1", "gtdb_species": "s__Flavisolibacter ginsenosidimutans", "ani": 76.0938, "matched_fragments": 58, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014163555.1", "gtdb_species": "s__Flavisolibacter sp014163555", "ani": 76.0087, "matched_fragments": 92, "total_fragments": 1272, "gtdb_taxonomy": 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