{ "type": "genome", "identifier": "GCA_937862845.1", "organism": "uncultured Burkholderiaceae bacterium", "title": "uncultured Burkholderiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937862845.1", "bioproject": "PRJEB51080", "biosample": "SAMEA14036487", "wgs_master": "CALMCK000000000.1", "refseq_category": "na", "taxid": "188056", "species_taxid": "188056", "organism_name": "uncultured Burkholderiaceae bacterium", "infraspecific_name": "", "isolate": "ERR3519528_bin.13_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "ERR3519528_bin.13_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/862/845/GCA_937862845.1_ERR3519528_bin.13_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Burkholderiaceae bacterium" ], "sample_taxid": [ "188056" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.491 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1726662", "Number of Sequences": "291", "Longest Sequences (bp)": "57924", "N50 (bp)": "8065", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.6", "Number of CDSs": "1397", "Average Protein Length": "295.4", "Coding Ratio (%)": "71.7", "Number of rRNAs": "0", "Number of tRNAs": "19", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ephemeroptericola cinctiostellae", "strain": "strain=F02", "accession": "GCA_003339525.1", "taxid": 2268024, "species_taxid": 2268024, "relation_to_type": "type", "validated": true, "ani": 78.0447, "matched_fragments": 116, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formosimonas limnophila", "strain": "strain=KCTC 32501", "accession": "GCA_014652675.1", "taxid": 1384487, "species_taxid": 1384487, "relation_to_type": "type", "validated": true, "ani": 77.6728, 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"gtdb_species": "s__CTSOIL-112 sp018261955", "ani": 76.81, "matched_fragments": 80, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__CTSOIL-112", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.267, "cell_length": 0.119, "doubling_h": -0.007, "growth_tmp": 30.563, "optimum_tmp": 30.641, "optimum_ph": 6.554, "genome_size": 6983573.911, "gc_content": 63.546, "coding_genes": 5983.195, "rRNA16S_genes": 4.699, "tRNA_genes": 62.266, "gram_stain": 0.0, "sporulation": 0.026, "motility": 0.693, "range_salinity": 0.222, "facultative_respiration": 0.072, "anaerobic_respiration": 0.032, "aerobic_respiration": 0.895, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.967, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.021, "vibrio_cell_shape": 0.01, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Formosimonas", "s__Formosimonas sp937862845" ], "_genome_taxon": [ "uncultured", "Burkholderiaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Formosimonas", "s__Formosimonas sp937862845", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Formosimonas", "Formosimonas", "sp937862845" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }