{ "type": "genome", "identifier": "GCA_937873185.1", "organism": "uncultured Methylobacterium sp.", "title": "uncultured Methylobacterium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937873185.1", "bioproject": "PRJEB51077", "biosample": "SAMEA14035915", "wgs_master": "CALMVS000000000.1", "refseq_category": "na", "taxid": "157278", "species_taxid": "157278", "organism_name": "uncultured Methylobacterium sp.", "infraspecific_name": "", "isolate": "SRR12240180_bin.30_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "SRR12240180_bin.30_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/873/185/GCA_937873185.1_SRR12240180_bin.30_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Methylobacterium sp." ], "sample_taxid": [ "157278" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.649 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.94, "contamination": 2.12, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", 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"status": "below_threshold" }, { "organism_name": "Methylobacterium phyllosphaerae", "strain": "strain=CBMB27", "accession": "GCA_001936175.1", "taxid": 418223, "species_taxid": 418223, "relation_to_type": "suspected-type", "validated": true, "ani": 85.4746, "matched_fragments": 393, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium phyllosphaerae", "strain": "strain=CBMB27", "accession": "GCA_900113465.1", "taxid": 418223, "species_taxid": 418223, "relation_to_type": "suspected-type", "validated": true, "ani": 85.4675, "matched_fragments": 394, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium longum", "strain": "strain=DSM 23933", "accession": "GCA_022179385.1", "taxid": 767694, "species_taxid": 767694, "relation_to_type": "type", "validated": true, "ani": 84.9177, "matched_fragments": 423, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium brachiatum", "strain": "strain=B0021", "accession": "GCA_020523825.1", "taxid": 269660, "species_taxid": 269660, "relation_to_type": "type", "validated": true, "ani": 84.7488, "matched_fragments": 379, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium mesophilicum", "strain": "strain=NBRC 15688", "accession": "GCA_022179445.1", "taxid": 39956, "species_taxid": 39956, "relation_to_type": "type", "validated": true, "ani": 84.5065, "matched_fragments": 372, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium pseudosasicola", "strain": "strain=BL36", "accession": "GCA_900114535.1", "taxid": 582667, "species_taxid": 582667, "relation_to_type": "type", "validated": true, "ani": 84.4064, "matched_fragments": 391, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gregans", "strain": "strain=NBRC 103626", "accession": "GCA_022179245.1", "taxid": 374424, "species_taxid": 374424, "relation_to_type": "type", "validated": true, "ani": 80.7873, "matched_fragments": 310, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.94, "contamination": 2.12, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009806555.1", "gtdb_species": "s__Methylobacterium sp009806555", "ani": 88.9331, "matched_fragments": 408, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900103445.1", "gtdb_species": "s__Methylobacterium phyllostachyos", "ani": 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