{ "type": "genome", "identifier": "GCA_937873205.1", "organism": "uncultured Acetobacteraceae bacterium", "title": "uncultured Acetobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937873205.1", "bioproject": "PRJEB51077", "biosample": "SAMEA14035951", "wgs_master": "CALMVO000000000.1", "refseq_category": "na", "taxid": "169975", "species_taxid": "169975", "organism_name": "uncultured Acetobacteraceae bacterium", "infraspecific_name": "", "isolate": "SRR13685167_bin.2_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "SRR13685167_bin.2_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/873/205/GCA_937873205.1_SRR13685167_bin.2_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Acetobacteraceae bacterium" ], "sample_taxid": [ "169975" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.024 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3733812", "Number of Sequences": "155", "Longest Sequences (bp)": "103466", "N50 (bp)": "38561", "Gap Ratio (%)": "0.009106", "GCcontent (%)": "69.9", "Number of CDSs": "3465", "Average Protein Length": "309.0", "Coding Ratio (%)": "86.0", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Endobacter medicaginis", "strain": "strain=LMG 26838", "accession": "GCA_013376135.1", "taxid": 1181271, "species_taxid": 1181271, "relation_to_type": "type", "validated": true, "ani": 78.8261, "matched_fragments": 272, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Endobacter medicaginis", "strain": "strain=CECT 8088", "accession": "GCA_014192375.1", "taxid": 1181271, "species_taxid": 1181271, "relation_to_type": "type", "validated": true, "ani": 78.6976, "matched_fragments": 408, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisphaera rubrifaciens", "strain": "strain=HS-AP3", "accession": "GCA_000964365.1", "taxid": 50715, "species_taxid": 50715, "relation_to_type": "type", "validated": true, "ani": 77.9709, "matched_fragments": 242, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5; ATCC 49037", "accession": "GCA_000021325.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 77.8632, "matched_fragments": 330, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5", "accession": "GCA_000067045.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 77.835, "matched_fragments": 333, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=LMG 7603", "accession": "GCA_014174315.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 77.8272, "matched_fragments": 326, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 77.7026, "matched_fragments": 399, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas cervicalis", "strain": "strain=ATCC 49957", "accession": "GCA_000164635.1", "taxid": 204525, "species_taxid": 204525, "relation_to_type": "type", "validated": true, "ani": 77.6675, "matched_fragments": 338, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter dulcium", "strain": "strain=LMG 1728", "accession": "GCA_014174165.1", "taxid": 2729096, "species_taxid": 2729096, "relation_to_type": "type", "validated": true, "ani": 77.6561, "matched_fragments": 292, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter liquefaciens", "strain": "strain=NBRC 12388", "accession": "GCA_006539085.1", "taxid": 89584, "species_taxid": 89584, "relation_to_type": "type", "validated": true, "ani": 77.6313, "matched_fragments": 268, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter liquefaciens", "strain": "strain=DSM 5603", "accession": "GCA_003350405.1", "taxid": 89584, "species_taxid": 89584, "relation_to_type": "type", "validated": true, "ani": 77.5928, "matched_fragments": 275, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter liquefaciens", "strain": "strain=LMG 1382", "accession": "GCA_014174285.1", "taxid": 89584, "species_taxid": 89584, "relation_to_type": "type", "validated": true, "ani": 77.5834, "matched_fragments": 280, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter melomenusus", "strain": "strain=AV436", "accession": "GCA_013155395.1", "taxid": 2766578, "species_taxid": 2766578, "relation_to_type": "type", "validated": true, "ani": 77.4569, "matched_fragments": 211, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novacetimonas maltaceti", "strain": "strain=LMG 1529", "accession": "GCA_002906255.1", "taxid": 1203393, "species_taxid": 1203393, "relation_to_type": "type", "validated": true, "ani": 77.2291, "matched_fragments": 195, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novacetimonas maltaceti", "strain": "strain=LMG 1529", "accession": "GCA_003206475.1", "taxid": 1203393, "species_taxid": 1203393, "relation_to_type": "type", "validated": true, "ani": 77.2097, "matched_fragments": 197, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidomonas methanolica", "strain": "strain=MB58", "accession": "GCA_000617865.1", "taxid": 437, "species_taxid": 437, "relation_to_type": "type", "validated": true, "ani": 77.0812, "matched_fragments": 202, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 77.0085, "matched_fragments": 240, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidomonas methanolica", "strain": "strain=NBRC 104435", "accession": "GCA_007988925.1", "taxid": 437, "species_taxid": 437, "relation_to_type": "type", "validated": true, "ani": 76.9735, "matched_fragments": 207, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 76.6816, "matched_fragments": 252, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter garciniae", "strain": "strain=TBRC 12339", "accession": "GCA_017377735.1", "taxid": 2817435, "species_taxid": 2817435, "relation_to_type": "type", "validated": true, "ani": 76.5385, "matched_fragments": 133, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 76.5013, "matched_fragments": 274, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903844135.1", "gtdb_species": "s__Lichenicola sp903844135", "ani": 81.6056, "matched_fragments": 637, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Lichenicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013201075.1", "gtdb_species": "s__Lichenicola cladoniae", "ani": 80.4623, "matched_fragments": 670, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Lichenicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005844085.1", "gtdb_species": "s__Lichenicoccus roseus", "ani": 79.9665, "matched_fragments": 583, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Lichenicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014192375.1", "gtdb_species": "s__Endobacter medicaginis", "ani": 78.7149, "matched_fragments": 407, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Endobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014174305.1", "gtdb_species": "s__Gluconacetobacter johannae", "ani": 78.0923, "matched_fragments": 303, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014174275.1", "gtdb_species": "s__Gluconacetobacter takamatsuzukensis", "ani": 78.0911, "matched_fragments": 331, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014174395.1", "gtdb_species": "s__Gluconacetobacter aggeris", "ani": 77.9927, "matched_fragments": 307, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 96.2181, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014174375.1", "gtdb_species": "s__Gluconacetobacter asukensis", "ani": 77.9565, "matched_fragments": 295, "total_fragments": 1163, "gtdb_taxonomy": 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"coccobacillus_cell_shape": 0.118, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Lichenicola", "s__Lichenicola sp937873205" ], "_genome_taxon": [ "uncultured", "Acetobacteraceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Lichenicola", "s__Lichenicola sp937873205", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Acetobacterales", "Acetobacteraceae", "Lichenicola", "Lichenicola", "sp937873205" ], "_meo": [ { "id": "MEO_0000420", "label": "symbiotic microbe" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }