{ "type": "genome", "identifier": "GCA_937873215.1", "organism": "uncultured Acetobacteraceae bacterium", "title": "uncultured Acetobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937873215.1", "bioproject": "PRJEB51077", "biosample": "SAMEA14035948", "wgs_master": "CALMVP000000000.1", "refseq_category": "na", "taxid": "169975", "species_taxid": "169975", "organism_name": "uncultured Acetobacteraceae bacterium", "infraspecific_name": "", "isolate": "SRR13685160_bin.16_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR13685160_bin.16_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/873/215/GCA_937873215.1_SRR13685160_bin.16_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Acetobacteraceae bacterium" ], "sample_taxid": [ "169975" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.631 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.73, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2183435", "Number of Sequences": "619", "Longest Sequences (bp)": "26704", "N50 (bp)": "4449", "Gap Ratio (%)": "0.346014", "GCcontent (%)": "61.0", "Number of CDSs": "1859", "Average Protein Length": "235.8", "Coding Ratio (%)": "60.2", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Endobacter medicaginis", "strain": "strain=LMG 26838", "accession": "GCA_013376135.1", "taxid": 1181271, "species_taxid": 1181271, "relation_to_type": "type", "validated": true, "ani": 77.1215, "matched_fragments": 55, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisphaera rubrifaciens", "strain": "strain=HS-AP3", "accession": "GCA_000964365.1", "taxid": 50715, "species_taxid": 50715, "relation_to_type": "type", "validated": true, "ani": 77.0379, "matched_fragments": 64, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Endobacter medicaginis", "strain": "strain=CECT 8088", "accession": "GCA_014192375.1", "taxid": 1181271, "species_taxid": 1181271, "relation_to_type": "type", "validated": true, "ani": 76.8099, "matched_fragments": 79, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 76.7897, "matched_fragments": 91, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 76.7642, "matched_fragments": 68, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisoma cellulosilyticum", "strain": "strain=HW T5.17", "accession": "GCA_020621385.1", "taxid": 2802395, "species_taxid": 2802395, "relation_to_type": "type", "validated": true, "ani": 76.7383, "matched_fragments": 53, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000964345.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 76.7133, "matched_fragments": 61, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000202835.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 76.6639, "matched_fragments": 67, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopila globiformis", "strain": "strain=DSM 161", "accession": "GCA_002937115.1", "taxid": 1071, "species_taxid": 1071, "relation_to_type": "type", "validated": true, "ani": 76.5496, "matched_fragments": 83, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5", "accession": "GCA_000067045.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 76.4505, "matched_fragments": 72, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5; ATCC 49037", "accession": "GCA_000021325.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 76.4249, "matched_fragments": 70, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rhizosphaerae", "strain": "strain=YW11", "accession": "GCA_002631185.1", "taxid": 1335062, "species_taxid": 1335062, "relation_to_type": "type", "validated": true, "ani": 76.4115, "matched_fragments": 62, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas cervicalis", "strain": "strain=ATCC 49957", "accession": "GCA_000164635.1", "taxid": 204525, "species_taxid": 204525, "relation_to_type": "type", "validated": true, "ani": 76.2942, "matched_fragments": 72, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisoma silvae", "strain": "strain=HW T2.11", "accession": "GCA_020618775.1", "taxid": 2802396, "species_taxid": 2802396, "relation_to_type": "type", "validated": true, "ani": 76.2, "matched_fragments": 57, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzae", "strain": "strain=KCTC 42542", "accession": "GCA_008386565.1", "taxid": 1608942, "species_taxid": 1608942, "relation_to_type": "type", "validated": true, "ani": 76.1451, "matched_fragments": 77, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 76.0061, "matched_fragments": 57, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas deserti", "strain": "strain=M3", "accession": "GCA_001982615.1", "taxid": 1817963, "species_taxid": 1817963, "relation_to_type": "type", "validated": true, "ani": 76.0051, "matched_fragments": 70, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas lacus", "strain": "strain=CGMCC 1.3617", "accession": "GCA_014644535.1", "taxid": 287609, "species_taxid": 287609, "relation_to_type": "type", "validated": true, "ani": 75.911, "matched_fragments": 64, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 75.9021, "matched_fragments": 66, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius crocodyli", "strain": "strain=CCP-6", "accession": "GCA_004005855.1", "taxid": 1979269, "species_taxid": 1979269, "relation_to_type": "type", "validated": true, "ani": 75.8354, "matched_fragments": 58, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 75.831, "matched_fragments": 53, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 75.8026, "matched_fragments": 56, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum argentinense", "strain": "strain=Az39", "accession": "GCA_000632475.2", "taxid": 2970906, "species_taxid": 2970906, "relation_to_type": "type", "validated": true, "ani": 75.2453, "matched_fragments": 50, "total_fragments": 408, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 77.73, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018971455.1", "gtdb_species": "s__REEB85 sp018971455", "ani": 77.1564, "matched_fragments": 51, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__REEB85", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001899585.1", "gtdb_species": "s__70-18 sp001899585", "ani": 77.056, "matched_fragments": 104, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__70-18", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000964365.1", "gtdb_species": "s__Acidisphaera rubrifaciens", "ani": 77.0379, "matched_fragments": 64, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903844135.1", "gtdb_species": "s__Lichenicola sp903844135", "ani": 76.9895, "matched_fragments": 91, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Lichenicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003133265.1", "gtdb_species": "s__PALSA-911 sp003133265", "ani": 76.9803, "matched_fragments": 76, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__PALSA-911", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018240635.1", "gtdb_species": "s__JAFEFJ01 sp018240635", "ani": 76.9451, "matched_fragments": 74, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__JAFEFJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903644035.1", "gtdb_species": "s__CAHJXG01 sp903644035", "ani": 76.8691, "matched_fragments": 51, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__CAHJXG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903851415.1", "gtdb_species": "s__Rhodopila sp903851415", "ani": 76.8367, "matched_fragments": 67, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Rhodopila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014192375.1", "gtdb_species": "s__Endobacter medicaginis", "ani": 76.8099, "matched_fragments": 79, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Endobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903907955.1", "gtdb_species": "s__BOG-930 sp903907955", "ani": 76.7956, "matched_fragments": 81, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__BOG-930", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_019240395.1", "gtdb_species": "s__JAFAYA01 sp019240395", "ani": 76.7944, "matched_fragments": 94, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__JAFAYA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017304945.1", "gtdb_species": "s__69-11 sp017304945", "ani": 76.727, "matched_fragments": 83, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__69-11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903918195.1", "gtdb_species": "s__BOG-930 sp903918195", "ani": 76.6213, "matched_fragments": 76, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__BOG-930", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003151425.1", "gtdb_species": "s__Palsa-883 sp003151425", "ani": 76.6199, "matched_fragments": 74, "total_fragments": 408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Palsa-883", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.82", "min_intra_species_ani": "99.82", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019240635.1", "gtdb_species": "s__JAFAYA01 sp019240635", "ani": 76.5779, "matched_fragments": 58, "total_fragments": 408, "gtdb_taxonomy": 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