{ "type": "genome", "identifier": "GCA_937873345.1", "organism": "uncultured Beijerinckiaceae bacterium", "title": "uncultured Beijerinckiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937873345.1", "bioproject": "PRJEB51077", "biosample": "SAMEA14035931", "wgs_master": "CALMRL000000000.1", "refseq_category": "na", "taxid": "239737", "species_taxid": "239737", "organism_name": "uncultured Beijerinckiaceae bacterium", "infraspecific_name": "", "isolate": "SRR13685139_bin.3_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "SRR13685139_bin.3_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/873/345/GCA_937873345.1_SRR13685139_bin.3_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Beijerinckiaceae bacterium" ], "sample_taxid": [ "239737" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.956 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3433793", "Number of Sequences": "696", "Longest Sequences (bp)": "37772", "N50 (bp)": "6564", "Gap Ratio (%)": "0.052245", "GCcontent (%)": "68.6", "Number of CDSs": "2939", "Average Protein Length": "264.6", "Coding Ratio (%)": "67.9", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lichenibacterium ramalinae", "strain": "strain=RmlP001", "accession": "GCA_004137085.1", "taxid": 2316527, "species_taxid": 2316527, "relation_to_type": "type", "validated": true, "ani": 78.1362, "matched_fragments": 282, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lichenibacterium minor", "strain": "strain=RmlP026", "accession": "GCA_004137685.1", "taxid": 2316528, "species_taxid": 2316528, "relation_to_type": "type", "validated": true, "ani": 78.0953, "matched_fragments": 310, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium jeotgali", "strain": "strain=LMG 23639", "accession": "GCA_022179345.1", "taxid": 381630, "species_taxid": 381630, "relation_to_type": "type", "validated": true, "ani": 77.9699, "matched_fragments": 256, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terrae", "strain": "strain=17Sr1-28", "accession": "GCA_003173755.1", "taxid": 2202827, "species_taxid": 2202827, "relation_to_type": "type", "validated": true, "ani": 77.9633, "matched_fragments": 312, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 77.9592, "matched_fragments": 316, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 77.9552, "matched_fragments": 288, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris viridis", "strain": "strain=ATCC 19567", "accession": "GCA_001402875.1", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 77.823, "matched_fragments": 187, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 77.797, "matched_fragments": 314, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinarimonas soli", "strain": "strain=BN140002", "accession": "GCA_008386575.1", "taxid": 1638099, "species_taxid": 1638099, "relation_to_type": "type", "validated": true, "ani": 77.7585, "matched_fragments": 208, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiotolerans", "strain": "strain=JCM 2831", "accession": "GCA_000019725.1", "taxid": 31998, "species_taxid": 31998, "relation_to_type": "type", "validated": true, "ani": 77.7158, "matched_fragments": 292, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseiarcus fermentans", "strain": "strain=DSM 24875", "accession": "GCA_003315135.1", "taxid": 1473586, "species_taxid": 1473586, "relation_to_type": "type", "validated": true, "ani": 77.7102, "matched_fragments": 237, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga thermotolerans", "strain": "strain=HR1", "accession": "GCA_009363855.1", "taxid": 2651334, "species_taxid": 2651334, "relation_to_type": "type", "validated": true, "ani": 77.6767, "matched_fragments": 161, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiotolerans", "strain": "strain=NBRC 15690", "accession": "GCA_007991055.1", "taxid": 31998, "species_taxid": 31998, "relation_to_type": "type", "validated": true, "ani": 77.6556, "matched_fragments": 291, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinarimonas ramus", "strain": "strain=CGMCC 1.9161", "accession": "GCA_014645695.1", "taxid": 690164, "species_taxid": 690164, "relation_to_type": "type", "validated": true, "ani": 77.6538, "matched_fragments": 228, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 77.638, "matched_fragments": 243, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 2734909, "relation_to_type": "type", "validated": true, "ani": 77.536, "matched_fragments": 215, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes piscinae", "strain": "strain=DSM 19946", "accession": "GCA_003258855.1", "taxid": 444923, "species_taxid": 444923, "relation_to_type": "type", "validated": true, "ani": 77.5216, "matched_fragments": 219, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=MIMD6", "accession": "GCA_003574465.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 77.496, "matched_fragments": 298, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 77.4749, "matched_fragments": 311, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylovirgula ligni", "strain": "strain=BW863", "accession": "GCA_003387225.1", "taxid": 569860, "species_taxid": 569860, "relation_to_type": "type", "validated": true, "ani": 77.4451, "matched_fragments": 161, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 77.4052, "matched_fragments": 248, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoblastus acidophilus", "strain": "strain=DSM 137", "accession": "GCA_003258765.1", "taxid": 1074, "species_taxid": 1074, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4027, "matched_fragments": 178, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoblastus acidophilus", "strain": "strain=DSM 137", "accession": "GCA_002937135.1", "taxid": 1074, "species_taxid": 1074, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3727, "matched_fragments": 185, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoblastus acidophilus", "strain": "strain=DSM 137", "accession": "GCA_900187365.1", "taxid": 1074, "species_taxid": 1074, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3693, "matched_fragments": 181, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium aerolatum", "strain": "strain=DSM 19013", "accession": "GCA_022179085.1", "taxid": 418708, "species_taxid": 418708, "relation_to_type": "type", "validated": true, "ani": 77.3507, "matched_fragments": 242, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 77.3115, "matched_fragments": 289, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Rhodoblastus alkanivorans", "strain": "", "accession": "GCA_022760755.1", "taxid": 2954117, "species_taxid": 2954117, "relation_to_type": "type", "validated": true, "ani": 77.2527, "matched_fragments": 159, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocapsa palsarum", "strain": "strain=NE2", "accession": "GCA_900114285.1", "taxid": 1612308, "species_taxid": 1612308, "relation_to_type": "type", "validated": true, "ani": 77.2475, "matched_fragments": 123, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocapsa aurea", "strain": "strain=KYG", "accession": "GCA_000746085.1", "taxid": 663610, "species_taxid": 663610, "relation_to_type": "type", "validated": true, "ani": 77.2233, "matched_fragments": 123, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocystis parvus", "strain": "strain=OBBP", "accession": "GCA_000283235.1", "taxid": 134, "species_taxid": 134, "relation_to_type": "type", "validated": true, "ani": 77.1623, "matched_fragments": 151, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_901457705.2", "gtdb_species": "s__RH-AL1 sp901457705", "ani": 80.7774, "matched_fragments": 405, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__RH-AL1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009765775.1", "gtdb_species": "s__RH-AL1 sp009765775", "ani": 79.0453, "matched_fragments": 315, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__RH-AL1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004137685.1", "gtdb_species": "s__Lichenihabitans minor", "ani": 78.1176, "matched_fragments": 308, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Lichenihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016793505.1", "gtdb_species": "s__GCA-013693735 sp016793505", "ani": 78.0916, "matched_fragments": 240, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__GCA-013693735", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016716745.1", "gtdb_species": "s__GCA-013693735 sp016716745", "ani": 78.054, "matched_fragments": 241, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__GCA-013693735", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004004555.2", "gtdb_species": "s__Methylobacterium sp004004555", "ani": 77.9389, "matched_fragments": 318, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002778835.1", "gtdb_species": "s__Methylobacterium sp002778835", "ani": 77.9304, "matched_fragments": 259, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003173755.1", "gtdb_species": "s__Methylobacterium terrae", "ani": 77.9293, "matched_fragments": 315, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003315135.1", "gtdb_species": "s__Roseiarcus fermentans", "ani": 77.6975, "matched_fragments": 238, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Roseiarcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009363855.1", "gtdb_species": "s__Microvirga thermotolerans", "ani": 77.6793, "matched_fragments": 160, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014645695.1", "gtdb_species": "s__Salinarimonas ramus", "ani": 77.6272, "matched_fragments": 230, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Salinarimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000022085.1", "gtdb_species": "s__Methylobacterium nodulans", "ani": 77.588, "matched_fragments": 258, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000188155.2", "gtdb_species": "s__Methylocystis sp000188155", "ani": 77.4886, "matched_fragments": 162, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003258865.1", "gtdb_species": "s__Rhodoplanes roseus", "ani": 77.4777, "matched_fragments": 242, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Rhodoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003164915.1", "gtdb_species": "s__Roseiarcus sp003164915", "ani": 77.4645, "matched_fragments": 171, "total_fragments": 771, "gtdb_taxonomy": 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