{ "type": "genome", "identifier": "GCA_937873435.1", "organism": "uncultured Gallionellaceae bacterium", "title": "uncultured Gallionellaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937873435.1", "bioproject": "PRJEB51074", "biosample": "SAMEA14036330", "wgs_master": "CALMWM000000000.1", "refseq_category": "na", "taxid": "499997", "species_taxid": "499997", "organism_name": "uncultured Gallionellaceae bacterium", "infraspecific_name": "", "isolate": "SRR6284162_bin.50_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "SRR6284162_bin.50_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/873/435/GCA_937873435.1_SRR6284162_bin.50_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Gallionellaceae bacterium" ], "sample_taxid": [ "499997" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.922 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 71.76, "contamination": 8.33, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3229983", "Number of Sequences": "686", "Longest Sequences (bp)": "24244", "N50 (bp)": "5755", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.9", "Number of CDSs": "2514", "Average Protein Length": "283.5", "Coding Ratio (%)": "66.2", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfurimicrobium lacus", "strain": "strain=skT11", "accession": "GCA_011764585.1", "taxid": 2715678, "species_taxid": 2715678, "relation_to_type": "type", "validated": true, "ani": 78.3353, "matched_fragments": 249, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuricella denitrificans", "strain": "strain=skB26", "accession": "GCA_000297055.2", "taxid": 649841, "species_taxid": 649841, "relation_to_type": "type", "validated": true, "ani": 78.1907, "matched_fragments": 197, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrigenium kumadai", "strain": "strain=An22", "accession": "GCA_018324385.1", "taxid": 1682490, "species_taxid": 1682490, "relation_to_type": "type", "validated": true, "ani": 77.2977, "matched_fragments": 123, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus nasutitermitis", "strain": "strain=CC-YHH838", "accession": "GCA_004801295.1", "taxid": 2565930, "species_taxid": 2565930, "relation_to_type": "type", "validated": true, "ani": 77.1103, "matched_fragments": 117, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula multivorans", "strain": "strain=TTN", "accession": "GCA_003851125.1", "taxid": 1559896, "species_taxid": 1559896, "relation_to_type": "type", "validated": true, "ani": 77.0172, "matched_fragments": 76, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 76.9961, "matched_fragments": 97, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus rhizosphaerae", "strain": "strain=CC-YHH848", "accession": "GCA_004801305.1", "taxid": 2565932, "species_taxid": 2565932, "relation_to_type": "type", "validated": true, "ani": 76.9394, "matched_fragments": 119, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=Gro7", "accession": "GCA_009938015.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 76.7906, "matched_fragments": 90, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula 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"GCA_001042925.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.1593, "matched_fragments": 65, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_012987025.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.132, "matched_fragments": 66, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_900167195.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.1183, "matched_fragments": 65, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": 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