{ "type": "genome", "identifier": "GCA_937873585.1", "organism": "uncultured Alphaproteobacteria bacterium", "title": "uncultured Alphaproteobacteria bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937873585.1", "bioproject": "PRJEB51080", "biosample": "SAMEA14036626", "wgs_master": "CALMYU000000000.1", "refseq_category": "na", "taxid": "91750", "species_taxid": "91750", "organism_name": "uncultured Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "SRR2107213_bin.35_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR2107213_bin.35_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/873/585/GCA_937873585.1_SRR2107213_bin.35_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Alphaproteobacteria bacterium" ], "sample_taxid": [ "91750" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Argentina" ], "sample_host_location_id": [], "data_size": "0.824 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.39, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3027635", "Number of Sequences": "373", "Longest Sequences (bp)": "66518", "N50 (bp)": "11478", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.2", "Number of CDSs": "2674", "Average Protein Length": "297.6", "Coding Ratio (%)": "78.9", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=SM30", "accession": "GCA_011317485.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 77.0491, "matched_fragments": 225, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobrevis albus", "strain": "strain=L22", "accession": "GCA_015904235.1", "taxid": 2793297, "species_taxid": 2793297, "relation_to_type": "type", "validated": true, "ani": 77.003, "matched_fragments": 245, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter oligotrophus", "strain": "strain=DSM 25521", "accession": "GCA_003046185.1", "taxid": 1122261, "species_taxid": 1122261, "relation_to_type": "type", "validated": true, "ani": 76.9883, "matched_fragments": 213, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 76.9715, "matched_fragments": 239, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia granuli", "strain": "strain=Ko04", "accession": "GCA_000380505.1", "taxid": 363259, "species_taxid": 363259, "relation_to_type": "type", "validated": true, "ani": 76.9636, "matched_fragments": 182, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella sonneratiae", "strain": "strain=MQZ13P-4", "accession": "GCA_017353515.1", "taxid": 2816856, "species_taxid": 2816856, "relation_to_type": "type", "validated": true, "ani": 76.9603, "matched_fragments": 213, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter dichloromethanicus", "strain": "strain=VKM B-2484", "accession": "GCA_018390645.1", "taxid": 518825, "species_taxid": 518825, "relation_to_type": "type", "validated": true, "ani": 76.9275, "matched_fragments": 204, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter cathodiphilus", "strain": "strain=S-12", "accession": "GCA_003008515.1", "taxid": 1868589, "species_taxid": 1868589, "relation_to_type": "type", "validated": true, "ani": 76.9187, "matched_fragments": 229, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter aquaticus", "strain": "strain=DSM 101", "accession": "GCA_004339465.1", "taxid": 100, "species_taxid": 100, "relation_to_type": "type", "validated": true, "ani": 76.9003, "matched_fragments": 171, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 76.8904, "matched_fragments": 184, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter rudongensis", "strain": "strain=CGMCC 1.1761", "accession": "GCA_900100155.1", "taxid": 177413, "species_taxid": 177413, "relation_to_type": "type", "validated": true, "ani": 76.8579, "matched_fragments": 190, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 76.7581, "matched_fragments": 273, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium jeotgali", "strain": "strain=LMG 23639", "accession": "GCA_022179345.1", "taxid": 381630, "species_taxid": 381630, "relation_to_type": "type", "validated": true, "ani": 76.7137, "matched_fragments": 186, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salipaludis", "strain": "strain=WN007", "accession": "GCA_002287065.1", "taxid": 2032623, "species_taxid": 2032623, "relation_to_type": "type", "validated": true, "ani": 76.6246, "matched_fragments": 125, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lichenibacterium ramalinae", "strain": "strain=RmlP001", "accession": "GCA_004137085.1", "taxid": 2316527, "species_taxid": 2316527, "relation_to_type": "type", "validated": true, "ani": 76.5583, "matched_fragments": 205, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum rhodesianum", "strain": "strain=DSM 5687", "accession": "GCA_014199985.1", "taxid": 29427, "species_taxid": 29427, "relation_to_type": "type", "validated": true, "ani": 76.5324, "matched_fragments": 202, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azorhizobium doebereinerae", "strain": "strain=UFLA1-100", "accession": "GCA_000473085.1", "taxid": 281091, "species_taxid": 281091, "relation_to_type": "type", "validated": true, "ani": 76.5309, "matched_fragments": 203, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 76.5281, "matched_fragments": 257, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.4853, "matched_fragments": 285, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.4675, "matched_fragments": 293, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 76.4106, "matched_fragments": 249, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum salsuginis", "strain": "strain=CGMCC 1.6474", "accession": "GCA_900114375.1", "taxid": 414703, "species_taxid": 414703, "relation_to_type": "type", "validated": true, "ani": 76.391, "matched_fragments": 205, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter carbonis", "strain": "strain=Q4.6", "accession": "GCA_003012935.1", "taxid": 2067569, "species_taxid": 2067569, "relation_to_type": "type", "validated": true, "ani": 76.3813, "matched_fragments": 124, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lichenibacterium minor", "strain": "strain=RmlP026", "accession": "GCA_004137685.1", "taxid": 2316528, "species_taxid": 2316528, "relation_to_type": "type", "validated": true, "ani": 76.3593, "matched_fragments": 220, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 76.3253, "matched_fragments": 256, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas mesophila", "strain": "strain=SYSUP0001", "accession": "GCA_003499275.1", "taxid": 2303576, "species_taxid": 2303576, "relation_to_type": "type", "validated": true, "ani": 76.2399, "matched_fragments": 114, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas folli", "strain": "strain=RHCKR7", "accession": "GCA_019429525.1", "taxid": 2862497, "species_taxid": 2862497, "relation_to_type": "type", "validated": true, "ani": 75.9454, "matched_fragments": 184, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Defluviicoccus vanus", "strain": "strain=Ben 114", "accession": "GCA_014672695.1", "taxid": 111831, "species_taxid": 111831, "relation_to_type": "type", "validated": true, "ani": 75.6296, "matched_fragments": 69, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.39, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016792565.1", "gtdb_species": "s__UBA2784 sp016792565", "ani": 99.0782, "matched_fragments": 714, "total_fragments": 807, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Micropepsales;f__Micropepsaceae;g__UBA2784", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_018241025.1", "gtdb_species": "s__Rhizomicrobium sp018241025", "ani": 77.5273, "matched_fragments": 227, "total_fragments": 807, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Micropepsales;f__Micropepsaceae;g__Rhizomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002352285.1", "gtdb_species": "s__UBA2784 sp002352285", "ani": 77.1097, "matched_fragments": 133, "total_fragments": 807, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Micropepsales;f__Micropepsaceae;g__UBA2784", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003241815.1", "gtdb_species": "s__Bosea sp003241815", "ani": 77.0833, "matched_fragments": 167, "total_fragments": 807, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Bosea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016869975.1", "gtdb_species": "s__JAFAZJ01 sp016869975", "ani": 77.0217, "matched_fragments": 196, "total_fragments": 807, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__JAFAZJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902506165.1", "gtdb_species": "s__Bosea sp902506165", "ani": 77.0058, "matched_fragments": 226, "total_fragments": 807, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Bosea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001696535.1", "gtdb_species": "s__Stappia indica", "ani": 76.9946, "matched_fragments": 206, "total_fragments": 807, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Stappia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.23", "min_intra_species_ani": "96.79", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900185725.1", "gtdb_species": "s__Stappia sp900185725", "ani": 76.9835, "matched_fragments": 228, "total_fragments": 807, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Bosea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.92", "min_intra_species_ani": "96.82", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.77", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_002298965.1", "gtdb_species": "s__Pinisolibacter sp002298965", "ani": 76.9245, "matched_fragments": 201, "total_fragments": 807, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Ancalomicrobiaceae;g__Pinisolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019239835.1", "gtdb_species": "s__JAFAZJ01 sp019239835", "ani": 76.9119, "matched_fragments": 124, "total_fragments": 807, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004362745.1", "gtdb_species": "s__Oharaeibacter diazotrophicus", "ani": 76.7417, "matched_fragments": 275, "total_fragments": 807, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Pleomorphomonadaceae;g__Oharaeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900110395.1", "gtdb_species": "s__Reyranella sp900110395", "ani": 76.7045, "matched_fragments": 210, "total_fragments": 807, "gtdb_taxonomy": 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