{ "type": "genome", "identifier": "GCA_937873685.1", "organism": "uncultured Rhodobacteraceae bacterium", "title": "uncultured Rhodobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937873685.1", "bioproject": "PRJEB51080", "biosample": "SAMEA14036595", "wgs_master": "CALMYO000000000.1", "refseq_category": "na", "taxid": "157276", "species_taxid": "157276", "organism_name": "uncultured Rhodobacteraceae bacterium", "infraspecific_name": "", "isolate": "SRR2107183_bin.57_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "SRR2107183_bin.57_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/873/685/GCA_937873685.1_SRR2107183_bin.57_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rhodobacteraceae bacterium" ], "sample_taxid": [ "157276" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Argentina" ], "sample_host_location_id": [], "data_size": "1.148 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.74, "contamination": 2.08, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4131002", "Number of Sequences": "298", "Longest Sequences (bp)": "71922", "N50 (bp)": "19323", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.1", "Number of CDSs": "3667", "Average Protein Length": "306.0", "Coding Ratio (%)": "81.5", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium composti", "strain": "strain=CC-YTH430", "accession": "GCA_004801285.1", "taxid": 2675109, "species_taxid": 2675109, "relation_to_type": "type", "validated": true, "ani": 78.6169, "matched_fragments": 419, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 78.2937, "matched_fragments": 495, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium carbonis", "strain": "strain=B2.3", "accession": "GCA_003970795.1", "taxid": 2495581, "species_taxid": 2495581, "relation_to_type": "type", "validated": true, "ani": 78.2704, "matched_fragments": 419, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor soli", "strain": "strain=ZZ-1", "accession": "GCA_001050155.1", "taxid": 1670619, "species_taxid": 1670619, "relation_to_type": "type", "validated": true, "ani": 78.2237, "matched_fragments": 387, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor pacificus", "strain": "strain=pht-3B", "accession": "GCA_000300335.1", "taxid": 1231180, "species_taxid": 1231180, "relation_to_type": "type", "validated": true, "ani": 78.1428, "matched_fragments": 378, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium silamurunense", "strain": "strain=CCBAU 01550", "accession": "GCA_014843825.1", "taxid": 499528, "species_taxid": 499528, "relation_to_type": "type", "validated": true, "ani": 78.1132, "matched_fragments": 421, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 78.0983, "matched_fragments": 440, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor alexandrii", "strain": "strain=Z3-1", "accession": "GCA_004000215.1", "taxid": 2448161, "species_taxid": 2448161, "relation_to_type": "type", "validated": true, "ani": 77.9947, "matched_fragments": 423, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium camelthorni", "strain": "strain=CCNWXJ 40-4", "accession": "GCA_011045125.1", "taxid": 475069, "species_taxid": 475069, "relation_to_type": "type", "validated": true, "ani": 77.9047, "matched_fragments": 403, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor arenosus", "strain": "strain=CAU 1489", "accession": "GCA_009742725.1", "taxid": 2682096, "species_taxid": 2682096, "relation_to_type": "type", "validated": true, "ani": 77.9026, "matched_fragments": 383, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 77.8998, "matched_fragments": 401, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium helmanticense", "strain": "strain=CSLC115N", "accession": "GCA_003034915.1", "taxid": 1776423, "species_taxid": 1776423, "relation_to_type": "type", "validated": true, "ani": 77.868, "matched_fragments": 400, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium tamadayense", "strain": "strain=DSM 28320", "accession": "GCA_003863365.1", "taxid": 425306, "species_taxid": 425306, "relation_to_type": "type", "validated": true, "ani": 77.8548, "matched_fragments": 434, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium wenxiniae", "strain": "strain=WYCCWR 10195", "accession": "GCA_002284535.1", "taxid": 2014805, "species_taxid": 2014805, "relation_to_type": "type", "validated": true, "ani": 77.8371, "matched_fragments": 402, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola thermophila", "strain": "strain=MEBiC13590", "accession": "GCA_013358405.1", "taxid": 2742145, "species_taxid": 2742145, "relation_to_type": "type", "validated": true, "ani": 77.8142, "matched_fragments": 334, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella sonneratiae", "strain": "strain=MQZ13P-4", "accession": "GCA_017353515.1", "taxid": 2816856, "species_taxid": 2816856, "relation_to_type": "type", "validated": true, "ani": 77.7989, "matched_fragments": 344, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium caraganae", "strain": "strain=LMG 24397", "accession": "GCA_016836705.1", "taxid": 483206, "species_taxid": 483206, "relation_to_type": "type", "validated": true, "ani": 77.7862, "matched_fragments": 439, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=19-2017", "accession": "GCA_018310375.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 77.7469, "matched_fragments": 348, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 77.7377, "matched_fragments": 349, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium muleiense", "strain": "strain=CGMCC 1.11022", "accession": "GCA_900099905.1", "taxid": 1004279, "species_taxid": 1004279, "relation_to_type": "type", "validated": true, "ani": 77.7304, "matched_fragments": 399, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 77.7211, "matched_fragments": 445, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 77.7201, "matched_fragments": 378, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter niigataensis", "strain": "strain=DSM 7050", "accession": "GCA_014200015.1", "taxid": 83265, "species_taxid": 83265, "relation_to_type": "type", "validated": true, "ani": 77.705, "matched_fragments": 404, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.74, "contamination": 2.08, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_017305835.1", "gtdb_species": "s__RCIO01 sp017305835", "ani": 78.7674, "matched_fragments": 426, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__RCIO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004801285.1", "gtdb_species": "s__Mesorhizobium composti", "ani": 78.6371, "matched_fragments": 417, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.99", "min_intra_species_ani": "96.99", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003577315.1", "gtdb_species": "s__Aquamicrobium_A sp003577315", "ani": 78.6222, "matched_fragments": 394, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aquamicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014904745.1", "gtdb_species": "s__Oricola sp014904745", "ani": 78.3935, "matched_fragments": 434, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Oricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004963905.1", "gtdb_species": "s__Mesorhizobium sp004963905", "ani": 78.3017, "matched_fragments": 408, "total_fragments": 1227, "gtdb_taxonomy": 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