{ "type": "genome", "identifier": "GCA_937877705.1", "organism": "uncultured Idiomarina sp.", "title": "uncultured Idiomarina sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937877705.1", "bioproject": "PRJEB51078", "biosample": "SAMEA14075004", "wgs_master": "CALEIQ000000000.1", "refseq_category": "na", "taxid": "352961", "species_taxid": "352961", "organism_name": "uncultured Idiomarina sp.", "infraspecific_name": "", "isolate": "ERR598965_bin.146_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "ERR598965_bin.146_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/877/705/GCA_937877705.1_ERR598965_bin.146_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Idiomarina sp." ], "sample_taxid": [ "352961" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.771 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.82, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2667170", "Number of Sequences": "162", "Longest Sequences (bp)": "92505", "N50 (bp)": "27600", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.0", "Number of CDSs": "2418", "Average Protein Length": "322.6", "Coding Ratio (%)": "87.7", "Number of rRNAs": "1", "Number of tRNAs": "14", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Idiomarina loihiensis", "strain": "strain=L2TR", "accession": "GCA_000008465.1", "taxid": 135577, "species_taxid": 135577, "relation_to_type": "type", "validated": true, "ani": 96.9431, "matched_fragments": 751, "total_fragments": 808, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Idiomarina ramblicola", "strain": "strain=R22", "accession": "GCA_003987255.1", "taxid": 263724, "species_taxid": 263724, "relation_to_type": "type", "validated": true, "ani": 84.7138, "matched_fragments": 600, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina abyssalis", "strain": "strain=KMM 227", "accession": "GCA_001294685.1", "taxid": 86102, "species_taxid": 86102, "relation_to_type": "type", "validated": true, "ani": 84.4543, "matched_fragments": 580, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina abyssalis", "strain": "strain=KMM 227", "accession": "GCA_900116625.1", "taxid": 86102, "species_taxid": 86102, "relation_to_type": "type", "validated": true, "ani": 84.3017, "matched_fragments": 596, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina zobellii", "strain": "strain=KMM 231", "accession": "GCA_001294745.1", "taxid": 86103, "species_taxid": 86103, "relation_to_type": "type", "validated": true, "ani": 80.1171, "matched_fragments": 358, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina zobellii", "strain": "strain=KMM 231", "accession": "GCA_900100855.1", "taxid": 86103, "species_taxid": 86103, "relation_to_type": "type", "validated": true, "ani": 80.072, "matched_fragments": 357, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina piscisalsi", "strain": "strain=TPS4-2", "accession": "GCA_003987095.1", "taxid": 1096243, "species_taxid": 1096243, "relation_to_type": "type", "validated": true, "ani": 79.5084, "matched_fragments": 348, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina planktonica", "strain": "strain=CGMCC 1.12458", "accession": "GCA_900177775.1", "taxid": 1323738, "species_taxid": 1323738, "relation_to_type": "type", "validated": true, "ani": 77.1462, "matched_fragments": 98, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.82, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000008465.1", "gtdb_species": "s__Idiomarina loihiensis", "ani": 96.9431, "matched_fragments": 751, "total_fragments": 808, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.95", "min_intra_species_ani": "95.80", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 17, "status": "conclusive" }, { "accession": "GCF_003987255.1", "gtdb_species": "s__Idiomarina ramblicola", "ani": 84.7138, "matched_fragments": 600, "total_fragments": 808, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900116625.1", "gtdb_species": "s__Idiomarina abyssalis", "ani": 84.3017, "matched_fragments": 596, "total_fragments": 808, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.70", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.79", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_900100855.1", "gtdb_species": "s__Idiomarina zobellii", "ani": 80.072, "matched_fragments": 357, "total_fragments": 808, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.93", "min_intra_species_ani": "96.27", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 9, 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