{ "type": "genome", "identifier": "GCA_937879855.1", "organism": "uncultured Acidobacteriaceae bacterium", "title": "uncultured Acidobacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937879855.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14082091", "wgs_master": "CALFMO000000000.1", "refseq_category": "na", "taxid": "194844", "species_taxid": "194844", "organism_name": "uncultured Acidobacteriaceae bacterium", "infraspecific_name": "", "isolate": "SRR5457059_bin.63_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "SRR5457059_bin.63_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/879/855/GCA_937879855.1_SRR5457059_bin.63_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Acidobacteriaceae bacterium" ], "sample_taxid": [ "194844" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada" ], "sample_host_location_id": [], "data_size": "2.070 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7232959", "Number of Sequences": "69", "Longest Sequences (bp)": "602917", "N50 (bp)": "211870", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.7", "Number of CDSs": "6445", "Average Protein Length": "317.1", "Coding Ratio (%)": "84.8", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Silvibacterium dinghuense", "strain": "strain=DHOF10", "accession": "GCA_004123295.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 76.1494, "matched_fragments": 70, "total_fragments": 2372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracidobacterium acidisoli", "strain": "strain=4G-K13", "accession": "GCA_003428625.2", "taxid": 2303751, "species_taxid": 2303751, "relation_to_type": "type", "validated": true, "ani": 75.989, "matched_fragments": 74, "total_fragments": 2372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium bohemicum", "strain": "strain=S15", "accession": "GCA_001006305.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 75.9413, "matched_fragments": 81, "total_fragments": 2372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium bohemicum", "strain": "strain=DSM 103733", "accession": "GCA_014201455.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 75.9321, "matched_fragments": 83, "total_fragments": 2372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella rosea", "strain": "strain=DSM 18704", "accession": "GCA_900188085.1", "taxid": 474952, "species_taxid": 474952, "relation_to_type": "type", "validated": true, "ani": 75.9277, "matched_fragments": 61, "total_fragments": 2372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidobacterium capsulatum", "strain": "strain=ATCC 51196", "accession": "GCA_000022565.1", "taxid": 33075, "species_taxid": 33075, "relation_to_type": "type", "validated": true, "ani": 75.9156, "matched_fragments": 69, "total_fragments": 2372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alloacidobacterium dinghuense", "strain": "strain=4Y35", "accession": "GCA_014274465.1", "taxid": 2763107, "species_taxid": 2763107, "relation_to_type": "type", "validated": true, "ani": 75.6651, "matched_fragments": 78, "total_fragments": 2372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella mallensis", "strain": "strain=MP5ACTX8", "accession": "GCA_000178955.2", "taxid": 940614, "species_taxid": 940614, "relation_to_type": "type", "validated": true, "ani": 75.5839, "matched_fragments": 57, "total_fragments": 2372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bryocella elongata", "strain": "strain=DSM 22489", "accession": "GCA_900108185.1", "taxid": 863522, "species_taxid": 863522, "relation_to_type": "type", "validated": true, "ani": 75.5415, "matched_fragments": 52, "total_fragments": 2372, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017883425.1", "gtdb_species": "s__Sulfotelmatobacter sp017883425", "ani": 80.6169, "matched_fragments": 784, "total_fragments": 2372, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Sulfotelmatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003136335.1", "gtdb_species": "s__Sulfotelmatobacter sp003136335", "ani": 80.5033, "matched_fragments": 787, "total_fragments": 2372, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Sulfotelmatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013289685.1", "gtdb_species": "s__Sulfotelmatobacter sp013289685", "ani": 79.9158, "matched_fragments": 931, "total_fragments": 2372, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Sulfotelmatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003134655.1", "gtdb_species": "s__Sulfotelmatobacter sp003134655", "ani": 79.6216, "matched_fragments": 980, "total_fragments": 2372, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Sulfotelmatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.77", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003166855.1", "gtdb_species": "s__Sulfotelmatobacter sp003166855", "ani": 79.589, "matched_fragments": 837, "total_fragments": 2372, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Sulfotelmatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017883385.1", "gtdb_species": "s__Sulfotelmatobacter sp017883385", "ani": 79.22, "matched_fragments": 772, "total_fragments": 2372, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Sulfotelmatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003132445.1", "gtdb_species": "s__Sulfotelmatobacter sp003132445", "ani": 79.0749, "matched_fragments": 725, "total_fragments": 2372, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Sulfotelmatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003164855.1", "gtdb_species": "s__Sulfotelmatobacter sp003164855", "ani": 76.9919, "matched_fragments": 350, "total_fragments": 2372, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Sulfotelmatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003139975.1", "gtdb_species": "s__Bog-209 sp003139975", "ani": 75.9258, "matched_fragments": 108, "total_fragments": 2372, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Bog-209", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.219, "cell_length": 0.203, "doubling_h": 1.138, "growth_tmp": 24.739, "optimum_tmp": 23.933, "optimum_ph": 4.825, "genome_size": 5521971.95, "gc_content": 60.4, "coding_genes": 3773.833, "rRNA16S_genes": 1.5, "tRNA_genes": 49.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.214, "range_salinity": null, "facultative_respiration": 0.058, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.941, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Acidobacteriota", "c__Terriglobia", "o__Terriglobales", "f__SbA1", "g__Sulfotelmatobacter", "s__Sulfotelmatobacter sp937879855" ], "_genome_taxon": [ "uncultured", "Acidobacteriaceae", "bacterium", "d__Bacteria", "p__Acidobacteriota", "c__Terriglobia", "o__Terriglobales", "f__SbA1", "g__Sulfotelmatobacter", "s__Sulfotelmatobacter sp937879855", "Bacteria", "Acidobacteriota", "Terriglobia", "Terriglobales", "SbA1", "Sulfotelmatobacter", "Sulfotelmatobacter", "sp937879855" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }