{ "type": "genome", "identifier": "GCA_937889145.1", "organism": "Prevotella pallens", "title": "Prevotella pallens", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937889145.1", "bioproject": "PRJEB50943", "biosample": "SAMEA14075730", "wgs_master": "CALBEW000000000.1", "refseq_category": "na", "taxid": "60133", "species_taxid": "60133", "organism_name": "Prevotella pallens", "infraspecific_name": "", "isolate": "SRR1952591_bin.88_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR1952591_bin.88_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/889/145/GCA_937889145.1_SRR1952591_bin.88_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella pallens" ], "sample_taxid": [ "60133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.776 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2732166", "Number of Sequences": "83", "Longest Sequences (bp)": "137353", "N50 (bp)": "56058", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.4", "Number of CDSs": "2131", "Average Protein Length": "345.2", "Coding Ratio (%)": "80.8", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella pallens", "strain": "strain=DSM 18710", "accession": "GCA_003269195.1", "taxid": 60133, "species_taxid": 60133, "relation_to_type": "type", "validated": true, "ani": 98.34, "matched_fragments": 779, "total_fragments": 868, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella pallens", "strain": "strain=ATCC 700821", "accession": "GCA_000220255.1", "taxid": 60133, "species_taxid": 60133, "relation_to_type": "type", "validated": true, "ani": 98.3272, "matched_fragments": 795, "total_fragments": 868, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=NCTC9336", "accession": "GCA_900454985.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 83.903, "matched_fragments": 615, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=ATCC 33563", "accession": "GCA_000220235.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 83.8342, "matched_fragments": 607, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=FDAARGOS_1486", "accession": "GCA_019930605.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 83.834, "matched_fragments": 622, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella aurantiaca", "strain": "strain=JCM 15754", "accession": "GCA_000614025.1", "taxid": 596085, "species_taxid": 596085, "relation_to_type": "type", "validated": true, "ani": 81.9835, "matched_fragments": 513, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_001953955.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 80.7696, "matched_fragments": 440, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 80.7245, "matched_fragments": 441, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 80.7159, "matched_fragments": 439, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 78.5207, "matched_fragments": 86, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella veroralis", "strain": "strain=DSM 19559", "accession": "GCA_000377625.1", "taxid": 28137, "species_taxid": 28137, "relation_to_type": "type", "validated": true, "ani": 77.6734, "matched_fragments": 99, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000220255.1", "gtdb_species": "s__Prevotella pallens", "ani": 98.3272, "matched_fragments": 795, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "96.89", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 40, "status": "conclusive" }, { "accession": "GCF_000220235.1", "gtdb_species": "s__Prevotella nigrescens", "ani": 83.8599, "matched_fragments": 605, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "97.70", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.78", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_000614025.1", "gtdb_species": "s__Prevotella aurantiaca", "ani": 81.9938, "matched_fragments": 512, 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