{ "type": "genome", "identifier": "GCA_937892245.1", "organism": "uncultured Rhodospirillaceae bacterium", "title": "uncultured Rhodospirillaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937892245.1", "bioproject": "PRJEB51078", "biosample": "SAMEA14075189", "wgs_master": "CALAUE000000000.1", "refseq_category": "na", "taxid": "352351", "species_taxid": "352351", "organism_name": "uncultured Rhodospirillaceae bacterium", "infraspecific_name": "", "isolate": "ERR599062_bin.144_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "ERR599062_bin.144_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/892/245/GCA_937892245.1_ERR599062_bin.144_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rhodospirillaceae bacterium" ], "sample_taxid": [ "352351" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "1.330 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.82, "contamination": 2.08, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4724444", "Number of Sequences": "712", "Longest Sequences (bp)": "37520", "N50 (bp)": "8912", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "3973", "Average Protein Length": "307.6", "Coding Ratio (%)": "77.6", "Number of rRNAs": "0", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Magnetospirillum caucaseum", "strain": "strain=SO-1", "accession": "GCA_000342045.1", "taxid": 1244869, "species_taxid": 1244869, "relation_to_type": "type", "validated": true, "ani": 76.4528, "matched_fragments": 144, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 76.2412, "matched_fragments": 117, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodospirillum photometricum", "strain": "strain=DSM 122", "accession": "GCA_000284415.2", "taxid": 1084, "species_taxid": 1084, "relation_to_type": "type", "validated": true, "ani": 76.0909, "matched_fragments": 61, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum marisnigri", "strain": "strain=SP-1", "accession": "GCA_001650715.1", "taxid": 1285242, "species_taxid": 1285242, "relation_to_type": "type", "validated": true, "ani": 76.0757, "matched_fragments": 123, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.025, "matched_fragments": 206, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 75.9805, "matched_fragments": 205, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stella humosa", "strain": "strain=DSM 5900", "accession": "GCA_003751345.1", "taxid": 94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 75.9204, "matched_fragments": 176, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 75.9139, "matched_fragments": 205, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga pakistanensis", "strain": "strain=NCCP-1258", "accession": "GCA_004458765.1", "taxid": 1682650, "species_taxid": 1682650, "relation_to_type": "type", "validated": true, "ani": 75.8815, "matched_fragments": 58, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 75.8469, "matched_fragments": 176, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 75.8364, "matched_fragments": 214, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrovibrio terrae", "strain": "strain=K5", "accession": "GCA_007197755.1", "taxid": 2594003, "species_taxid": 2594003, "relation_to_type": "type", "validated": true, "ani": 75.8286, "matched_fragments": 111, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibaculum pallidiluteum", "strain": "strain=SYSU D00532", "accession": "GCA_017355985.1", "taxid": 2812559, "species_taxid": 2812559, "relation_to_type": "type", "validated": true, "ani": 75.805, "matched_fragments": 135, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrospirillum iridis", "strain": "strain=DSM 22198", "accession": "GCA_014205765.1", "taxid": 765888, "species_taxid": 765888, "relation_to_type": "type", "validated": true, "ani": 75.791, "matched_fragments": 129, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella aquatilis", "strain": "strain=KCTC 52223", "accession": "GCA_020880995.1", "taxid": 2035356, "species_taxid": 2035356, "relation_to_type": "type", "validated": true, "ani": 75.7706, "matched_fragments": 118, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alsobacter soli", "strain": "strain=SH9", "accession": "GCA_003004785.1", "taxid": 2109933, "species_taxid": 2109933, "relation_to_type": "type", "validated": true, "ani": 75.7617, "matched_fragments": 93, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum salsuginis", "strain": "strain=CGMCC 1.6474", "accession": "GCA_900114375.1", "taxid": 414703, "species_taxid": 414703, "relation_to_type": "type", "validated": true, "ani": 75.7436, "matched_fragments": 113, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 75.7203, "matched_fragments": 127, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 75.6962, "matched_fragments": 124, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodospirillum rubrum", "strain": "strain=DSM 467", "accession": "GCA_019134555.1", "taxid": 1085, "species_taxid": 1085, "relation_to_type": "type", "validated": true, "ani": 75.6254, "matched_fragments": 119, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium variabile", "strain": "strain=DSM 16961", "accession": "GCA_001043975.1", "taxid": 298794, "species_taxid": 298794, "relation_to_type": "type", "validated": true, "ani": 75.617, "matched_fragments": 138, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albimonas pacifica", "strain": "strain=CGMCC 1.11030", "accession": "GCA_900113695.1", "taxid": 1114924, "species_taxid": 1114924, "relation_to_type": "type", "validated": true, "ani": 75.5853, "matched_fragments": 132, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 75.4787, "matched_fragments": 106, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas profundi", "strain": "strain=LMO-1", "accession": "GCA_009739515.1", "taxid": 2681549, "species_taxid": 2681549, "relation_to_type": "type", "validated": true, "ani": 75.4432, "matched_fragments": 77, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sandarakinorhabdus cyanobacteriorum", "strain": "strain=TH057", "accession": "GCA_002251755.1", "taxid": 1981098, "species_taxid": 1981098, "relation_to_type": "type", "validated": true, "ani": 75.4233, "matched_fragments": 52, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 75.4196, "matched_fragments": 152, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas folli", "strain": "strain=RHCKR7", "accession": "GCA_019429525.1", "taxid": 2862497, "species_taxid": 2862497, "relation_to_type": "type", "validated": true, "ani": 75.2746, "matched_fragments": 62, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax halodurans", "strain": "strain=JCM 10272", "accession": "GCA_000521785.1", "taxid": 93683, "species_taxid": 93683, "relation_to_type": "type", "validated": true, "ani": 75.0936, "matched_fragments": 72, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubellimicrobium aerolatum", "strain": "strain=DSM 19297", "accession": "GCA_017872975.1", "taxid": 490979, "species_taxid": 490979, "relation_to_type": "type", "validated": true, "ani": 75.0705, "matched_fragments": 62, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.82, "contamination": 2.08, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_002690215.1", "gtdb_species": "s__GCA-2690215 sp002690215", "ani": 99.4061, "matched_fragments": 972, "total_fragments": 1210, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__UBA2966;f__UBA2966;g__GCA-2690215", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_016869515.1", "gtdb_species": "s__VGDZ01 sp016869515", "ani": 76.6066, "matched_fragments": 185, "total_fragments": 1210, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__VGDZ01;f__VGDZ01;g__VGDZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002781745.1", "gtdb_species": "s__UBA1479 sp002781745", "ani": 76.1724, "matched_fragments": 127, "total_fragments": 1210, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__UBA1479", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009693905.1", "gtdb_species": "s__2-12-FULL-67-15 sp009693905", "ani": 76.1589, "matched_fragments": 69, "total_fragments": 1210, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__2-12-FULL-67-15;g__2-12-FULL-67-15", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.72", "min_intra_species_af": "0.72", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000518365.1", "gtdb_species": "s__URHD0088 sp000518365", "ani": 76.0371, "matched_fragments": 149, "total_fragments": 1210, "gtdb_taxonomy": 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