{ "tc_result": [ { "organism_name": "Streptococcus shenyangsis", "strain": "strain=D19", "accession": "GCA_006385785.1", "taxid": 2589786, "species_taxid": 2589786, "relation_to_type": "type", "validated": true, "ani": 94.9412, "matched_fragments": 553, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=FDAARGOS 1456", "accession": "GCA_019047825.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 93.0543, "matched_fragments": 498, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=NCTC 12261", "accession": "GCA_000148585.3", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 93.0213, "matched_fragments": 498, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=NCTC12261", "accession": "GCA_900459425.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 93.0126, "matched_fragments": 497, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=CCUG 31611", "accession": "GCA_002014755.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 92.9707, "matched_fragments": 496, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 92.6687, "matched_fragments": 505, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 92.1675, "matched_fragments": 493, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus chosunense", "strain": "strain=ChDC B353", "accession": "GCA_003626515.1", "taxid": 2707003, "species_taxid": 2707003, "relation_to_type": "type", "validated": true, "ani": 92.0707, "matched_fragments": 499, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus symci", "strain": "strain=C17", "accession": "GCA_006385165.1", "taxid": 2588991, "species_taxid": 2588991, "relation_to_type": "type", "validated": true, "ani": 91.9337, "matched_fragments": 496, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 86.7307, "matched_fragments": 448, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3357, "matched_fragments": 120, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 77.9727, "matched_fragments": 116, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000222785.1", "gtdb_species": "s__Streptococcus mitis_N", "ani": 95.2973, "matched_fragments": 543, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.68", "min_intra_species_ani": "95.43", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCF_006385785.1", "gtdb_species": "s__Streptococcus shenyangsis", "ani": 94.9412, "matched_fragments": 553, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.31", "min_intra_species_ani": "95.07", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000257905.1", "gtdb_species": "s__Streptococcus mitis_L", "ani": 94.38, "matched_fragments": 535, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000722685.1", "gtdb_species": "s__Streptococcus mitis_M", "ani": 94.1787, "matched_fragments": 561, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003943935.1", "gtdb_species": "s__Streptococcus mitis_BK", "ani": 94.1207, "matched_fragments": 552, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905221085.1", "gtdb_species": "s__Streptococcus sp905221085", "ani": 94.0762, "matched_fragments": 520, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001074825.1", "gtdb_species": "s__Streptococcus pseudopneumoniae_C", "ani": 93.826, "matched_fragments": 502, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0354, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "97.20", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002860905.1", "gtdb_species": "s__Streptococcus oralis_BA", "ani": 93.3911, "matched_fragments": 514, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018364455.1", "gtdb_species": "s__Streptococcus mitis_BR", "ani": 93.2652, "matched_fragments": 491, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001074975.1", "gtdb_species": "s__Streptococcus pseudopneumoniae_D", "ani": 93.2573, "matched_fragments": 498, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000722775.1", "gtdb_species": "s__Streptococcus mitis_AV", "ani": 93.207, "matched_fragments": 506, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.15", "min_intra_species_ani": "95.15", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000148585.2", "gtdb_species": "s__Streptococcus mitis", "ani": 93.0583, "matched_fragments": 497, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.33", "min_intra_species_ani": "95.07", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_001074635.1", "gtdb_species": "s__Streptococcus mitis_E", "ani": 92.9994, "matched_fragments": 463, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905221115.1", "gtdb_species": "s__Streptococcus sp905221115", "ani": 92.9872, "matched_fragments": 516, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000220045.1", "gtdb_species": "s__Streptococcus mitis_AP", "ani": 92.8985, "matched_fragments": 518, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001281025.1", "gtdb_species": "s__Streptococcus mitis_AK", "ani": 92.7347, "matched_fragments": 500, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.14", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_905221245.1", "gtdb_species": "s__Streptococcus sp905221245", "ani": 92.5563, "matched_fragments": 497, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005144795.1", "gtdb_species": "s__Streptococcus mitis_BB", "ani": 92.2753, "matched_fragments": 494, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.49", "min_intra_species_ani": "95.02", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003942765.1", "gtdb_species": "s__Streptococcus mitis_BE", "ani": 92.1799, "matched_fragments": 501, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.27", "min_intra_species_ani": "95.27", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003626515.1", "gtdb_species": "s__Streptococcus chosunense", "ani": 92.0707, "matched_fragments": 499, "total_fragments": 633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.51", "min_intra_species_ani": "95.33", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" } ] }