{ "type": "genome", "identifier": "GCA_937892425.1", "organism": "uncultured Prevotella sp.", "title": "uncultured Prevotella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937892425.1", "bioproject": "PRJEB51895", "biosample": "SAMEA14081113", "wgs_master": "CALAVL000000000.1", "refseq_category": "na", "taxid": "159272", "species_taxid": "159272", "organism_name": "uncultured Prevotella sp.", "infraspecific_name": "", "isolate": "SRR5574510_bin.85_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR5574510_bin.85_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/892/425/GCA_937892425.1_SRR5574510_bin.85_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Prevotella sp." ], "sample_taxid": [ "159272" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.829 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2887131", "Number of Sequences": "130", "Longest Sequences (bp)": "117835", "N50 (bp)": "31101", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.2", "Number of CDSs": "2127", "Average Protein Length": "385.1", "Coding Ratio (%)": "85.1", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 99.9676, "matched_fragments": 885, "total_fragments": 895, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Xylanibacter muris", "strain": "strain=PMUR", "accession": "GCA_013166605.1", "taxid": 2736290, "species_taxid": 2736290, "relation_to_type": "type", "validated": true, "ani": 77.1581, "matched_fragments": 131, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pectinovora", "strain": "strain=P4-76", "accession": "GCA_000834015.1", "taxid": 1602169, "species_taxid": 1602169, "relation_to_type": "type", "validated": true, "ani": 76.7806, "matched_fragments": 94, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ruminicola", "strain": "strain=ATCC 19189", "accession": "GCA_900108375.1", "taxid": 839, "species_taxid": 839, "relation_to_type": "type", "validated": true, "ani": 76.7399, "matched_fragments": 61, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella multiformis", "strain": "strain=DSM 16608", "accession": "GCA_000191065.1", "taxid": 282402, "species_taxid": 282402, "relation_to_type": "type", "validated": true, "ani": 76.6986, "matched_fragments": 51, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella denticola", "strain": "strain=DSM 20614", "accession": "GCA_000421205.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 76.6793, "matched_fragments": 51, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentasini", "strain": "strain=JCM 15908", "accession": "GCA_000614065.1", "taxid": 589537, "species_taxid": 589537, "relation_to_type": "type", "validated": true, "ani": 76.6749, "matched_fragments": 53, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella brevis", "strain": "strain=ATCC 19188", "accession": "GCA_000621725.1", "taxid": 83231, "species_taxid": 83231, "relation_to_type": "type", "validated": true, "ani": 76.6456, "matched_fragments": 75, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 76.638, "matched_fragments": 96, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella koreensis", "strain": "strain=KCOM 3155", "accession": "GCA_003977605.1", "taxid": 2490854, "species_taxid": 2490854, "relation_to_type": "type", "validated": true, "ani": 76.6379, "matched_fragments": 61, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ruminicola", "strain": "strain=Bryant 23", "accession": "GCA_000025925.1", "taxid": 839, "species_taxid": 839, "relation_to_type": "type", "validated": true, "ani": 76.589, "matched_fragments": 58, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 76.5018, "matched_fragments": 72, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013166545.1", "gtdb_species": "s__Prevotella sp013166545", "ani": 99.9687, "matched_fragments": 890, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_900549175.1", "gtdb_species": "s__Prevotella sp900549175", "ani": 81.0796, "matched_fragments": 507, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017483185.1", "gtdb_species": "s__Prevotella sp017483185", "ani": 78.8207, "matched_fragments": 253, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900553965.1", "gtdb_species": "s__Prevotella sp900553965", "ani": 78.5389, "matched_fragments": 229, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.57", "min_intra_species_ani": "97.60", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905216025.1", "gtdb_species": "s__Prevotella sp905216025", "ani": 78.2446, "matched_fragments": 274, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.83", "min_intra_species_ani": "95.83", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017623155.1", "gtdb_species": "s__Prevotella sp017623155", "ani": 77.8369, "matched_fragments": 191, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002933775.1", "gtdb_species": "s__Prevotella sp002933775", "ani": 77.6253, "matched_fragments": 167, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "97.52", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_017410365.1", "gtdb_species": "s__Prevotella sp017410365", "ani": 77.184, "matched_fragments": 117, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.93", "min_intra_species_ani": "96.60", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.74", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_016899955.1", "gtdb_species": "s__Prevotella sp900540415", "ani": 77.0613, "matched_fragments": 178, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_900545525.1", "gtdb_species": "s__Prevotella sp900545525", "ani": 77.0595, "matched_fragments": 105, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.76", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_002394385.1", "gtdb_species": "s__Prevotella sp002394385", "ani": 76.824, "matched_fragments": 96, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.28", "min_intra_species_ani": "97.06", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_900772835.1", "gtdb_species": "s__Prevotella sp900772835", "ani": 76.68, "matched_fragments": 74, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900315835.1", "gtdb_species": "s__Prevotella sp900315835", "ani": 76.3431, "matched_fragments": 60, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.59", "min_intra_species_ani": "98.19", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_905198745.1", "gtdb_species": "s__Prevotella sp905198745", "ani": 75.8593, "matched_fragments": 85, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.226, "cell_length": 0.114, "doubling_h": null, "growth_tmp": 36.755, "optimum_tmp": 35.219, "optimum_ph": 7.109, "genome_size": 3037444.691, "gc_content": 45.137, "coding_genes": 2508.172, "rRNA16S_genes": 4.0, "tRNA_genes": 50.875, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.975, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.025, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Bacteroidaceae", "g__Prevotella", "s__Prevotella rodentium" ], "_genome_taxon": [ "uncultured", "Prevotella", "sp.", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Bacteroidaceae", "g__Prevotella", "s__Prevotella rodentium", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Bacteroidaceae", "Prevotella", "Prevotella", "rodentium" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }