{
    "type": "genome",
    "identifier": "GCA_937893405.1",
    "organism": "uncultured Methanoculleus sp.",
    "title": "uncultured Methanoculleus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_937893405.1",
        "bioproject": "PRJEB51073",
        "biosample": "SAMEA14037453",
        "wgs_master": "CALBJN000000000.1",
        "refseq_category": "na",
        "taxid": "183762",
        "species_taxid": "183762",
        "organism_name": "uncultured Methanoculleus sp.",
        "infraspecific_name": "",
        "isolate": "SRR1562005_bin.14_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/10",
        "asm_name": "SRR1562005_bin.14_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/893/405/GCA_937893405.1_SRR1562005_bin.14_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-10",
    "dateModified": "2023-01-10",
    "datePublished": "2023-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Methanoculleus sp."
        ],
        "sample_taxid": [
            "183762"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.773 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 6.25,
        "strain_heterogeneity": 33.33,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2697059",
        "Number of Sequences": "603",
        "Longest Sequences (bp)": "31322",
        "N50 (bp)": "5643",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.5",
        "Number of CDSs": "2242",
        "Average Protein Length": "259.0",
        "Coding Ratio (%)": "64.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Methanoculleus bourgensis",
                "strain": "strain=MS2T",
                "accession": "GCA_000304355.2",
                "taxid": 83986,
                "species_taxid": 83986,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.4084,
                "matched_fragments": 452,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanoculleus marisnigri",
                "strain": "strain=JR1",
                "accession": "GCA_000015825.1",
                "taxid": 2198,
                "species_taxid": 2198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6799,
                "matched_fragments": 372,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus sediminis",
                "strain": "strain=S3Fa",
                "accession": "GCA_001017125.1",
                "taxid": 1550566,
                "species_taxid": 1550566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5991,
                "matched_fragments": 352,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus chikugoensis",
                "strain": "strain=MG62",
                "accession": "GCA_019669965.1",
                "taxid": 118126,
                "species_taxid": 118126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5729,
                "matched_fragments": 370,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus horonobensis",
                "strain": "strain=T10",
                "accession": "GCA_001602375.1",
                "taxid": 528314,
                "species_taxid": 528314,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9909,
                "matched_fragments": 358,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus thermophilus",
                "strain": "strain=CR-1",
                "accession": "GCA_001571405.1",
                "taxid": 2200,
                "species_taxid": 2200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5303,
                "matched_fragments": 321,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 6.25,
            "strain_heterogeneity": 33.33
        },
        "gtdb_result": [
            {
                "accession": "GCF_000304355.2",
                "gtdb_species": "s__Methanoculleus bourgensis",
                "ani": 95.3928,
                "matched_fragments": 452,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.25",
                "min_intra_species_ani": "95.89",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001512375.1",
                "gtdb_species": "s__Methanoculleus thermohydrogenotrophicum",
                "ani": 85.5974,
                "matched_fragments": 332,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.70",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002501655.1",
                "gtdb_species": "s__Methanoculleus sp002501655",
                "ani": 85.2341,
                "matched_fragments": 374,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019136335.1",
                "gtdb_species": "s__Methanoculleus sp019136335",
                "ani": 84.6578,
                "matched_fragments": 299,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012521035.1",
                "gtdb_species": "s__Methanoculleus sp012521035",
                "ani": 84.5425,
                "matched_fragments": 292,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016841955.1",
                "gtdb_species": "s__Methanoculleus sp016841955",
                "ani": 84.5194,
                "matched_fragments": 362,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012510295.1",
                "gtdb_species": "s__Methanoculleus sp012510295",
                "ani": 84.4731,
                "matched_fragments": 219,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012510335.1",
                "gtdb_species": "s__Methanoculleus sp012510335",
                "ani": 84.1837,
                "matched_fragments": 229,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012797575.1",
                "gtdb_species": "s__Methanoculleus sp012797575",
                "ani": 83.1854,
                "matched_fragments": 241,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.042,
        "cell_length": -0.042,
        "doubling_h": 0.977,
        "growth_tmp": 40.952,
        "optimum_tmp": 40.204,
        "optimum_ph": 6.907,
        "genome_size": 2441843.114,
        "gc_content": 60.765,
        "coding_genes": 2468.875,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 48.166,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.5,
        "thermophilic_range_tmp": 0.5,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanomicrobia",
        "o__Methanomicrobiales",
        "f__Methanoculleaceae",
        "g__Methanoculleus",
        "s__Methanoculleus bourgensis"
    ],
    "_genome_taxon": [
        "uncultured",
        "Methanoculleus",
        "sp.",
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanomicrobia",
        "o__Methanomicrobiales",
        "f__Methanoculleaceae",
        "g__Methanoculleus",
        "s__Methanoculleus bourgensis",
        "Archaea",
        "Halobacteriota",
        "Methanomicrobia",
        "Methanomicrobiales",
        "Methanoculleaceae",
        "Methanoculleus",
        "Methanoculleus",
        "bourgensis"
    ],
    "_meo": [
        {
            "id": "MEO_0000835",
            "label": "food associated"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}