{ "type": "genome", "identifier": "GCA_937894455.1", "organism": "uncultured Lactobacillus sp.", "title": "uncultured Lactobacillus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937894455.1", "bioproject": "PRJEB51073", "biosample": "SAMEA14037280", "wgs_master": "CALCRA000000000.1", "refseq_category": "na", "taxid": "153152", "species_taxid": "153152", "organism_name": "uncultured Lactobacillus sp.", "infraspecific_name": "", "isolate": "ERR4757843_bin.13_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "ERR4757843_bin.13_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/894/455/GCA_937894455.1_ERR4757843_bin.13_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lactobacillus sp." ], "sample_taxid": [ "153152" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.685 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2400201", "Number of Sequences": "117", "Longest Sequences (bp)": "176399", "N50 (bp)": "34687", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.5", "Number of CDSs": "2294", "Average Protein Length": "293.1", "Coding Ratio (%)": "84.0", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Liquorilactobacillus mali", "strain": "strain=KCTC 3596", "accession": "GCA_000260415.1", "taxid": 1618, "species_taxid": 1618, "relation_to_type": "type", "validated": true, "ani": 94.2079, "matched_fragments": 616, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Liquorilactobacillus mali", "strain": "strain=DSM 20444", "accession": "GCA_001436535.1", "taxid": 1618, "species_taxid": 1618, "relation_to_type": "type", "validated": true, "ani": 94.1712, "matched_fragments": 589, 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"status": "below_threshold" }, { "organism_name": "Liquorilactobacillus cacaonum", "strain": "strain=DSM 21116", "accession": "GCA_001436735.1", "taxid": 483012, "species_taxid": 483012, "relation_to_type": "type", "validated": true, "ani": 79.582, "matched_fragments": 282, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Liquorilactobacillus aquaticus", "strain": "strain=DSM 21051", "accession": "GCA_001436755.1", "taxid": 392566, "species_taxid": 392566, "relation_to_type": "type", "validated": true, "ani": 78.802, "matched_fragments": 101, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Liquorilactobacillus capillatus", "strain": "strain=DSM 19910", "accession": "GCA_001434915.1", "taxid": 480931, "species_taxid": 480931, "relation_to_type": "type", "validated": true, "ani": 78.196, "matched_fragments": 93, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Liquorilactobacillus ghanensis", "strain": "strain=DSM 18630", "accession": "GCA_001435235.1", "taxid": 399370, "species_taxid": 399370, "relation_to_type": "type", "validated": true, "ani": 77.3202, "matched_fragments": 93, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001437155.1", "gtdb_species": "s__Liquorilactobacillus mali_A", "ani": 98.8284, "matched_fragments": 648, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000260415.1", "gtdb_species": "s__Liquorilactobacillus mali", 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"Liquorilactobacillus", "Liquorilactobacillus", "mali", "A" ], "_meo": [ { "id": "MEO_0000835", "label": "food associated" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }