{ "type": "genome", "identifier": "GCA_937895795.1", "organism": "Komagataeibacter europaeus", "title": "Komagataeibacter europaeus", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937895795.1", "bioproject": "PRJEB51073", "biosample": "SAMEA14037461", "wgs_master": "CALAZN000000000.1", "refseq_category": "na", "taxid": "33995", "species_taxid": "33995", "organism_name": "Komagataeibacter europaeus", "infraspecific_name": "", "isolate": "SRR1562005_bin.66_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "SRR1562005_bin.66_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/895/795/GCA_937895795.1_SRR1562005_bin.66_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Komagataeibacter europaeus" ], "sample_taxid": [ "33995" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.911 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3244928", "Number of Sequences": "298", "Longest Sequences (bp)": "149636", "N50 (bp)": "16934", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "2841", "Average Protein Length": "304.6", "Coding Ratio (%)": "80.0", "Number of rRNAs": "1", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Komagataeibacter europaeus", "strain": "strain=type strain:LMG 18890", "accession": "GCA_000285295.1", "taxid": 33995, "species_taxid": 33995, "relation_to_type": "suspected-type", "validated": true, "ani": 97.9051, "matched_fragments": 819, "total_fragments": 930, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Komagataeibacter swingsii", "strain": "strain=LMG 22125", "accession": "GCA_003207895.1", "taxid": 215220, "species_taxid": 215220, "relation_to_type": "type", "validated": true, "ani": 91.8666, "matched_fragments": 796, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter diospyri", "strain": "strain=MSKU 9", "accession": "GCA_006538165.1", "taxid": 1932662, "species_taxid": 1932662, "relation_to_type": "type", "validated": true, "ani": 91.0862, "matched_fragments": 779, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter intermedius", "strain": "strain=TF2", "accession": "GCA_000964425.1", "taxid": 66229, "species_taxid": 66229, "relation_to_type": "type", "validated": true, "ani": 89.5323, "matched_fragments": 712, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter oboediens", "strain": "strain=LMG 18849", "accession": "GCA_003207815.1", "taxid": 65958, "species_taxid": 65958, "relation_to_type": "type", "validated": true, "ani": 89.1538, "matched_fragments": 718, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter garciniae", "strain": "strain=TBRC 12339", "accession": "GCA_017377735.1", "taxid": 2817435, "species_taxid": 2817435, "relation_to_type": "type", "validated": true, "ani": 78.2515, "matched_fragments": 280, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neoasaia chiangmaiensis", "strain": "strain=NBRC 101099", "accession": "GCA_002005465.1", "taxid": 320497, "species_taxid": 320497, "relation_to_type": "type", "validated": true, "ani": 77.4441, "matched_fragments": 122, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neoasaia chiangmaiensis", "strain": "strain=NBRC 101099", "accession": "GCA_007991115.1", "taxid": 320497, "species_taxid": 320497, "relation_to_type": "type", "validated": true, "ani": 77.3876, "matched_fragments": 121, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asaia lannensis", "strain": 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3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }