{ "type": "genome", "identifier": "GCA_937895845.1", "organism": "uncultured Prevotella sp.", "title": "uncultured Prevotella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937895845.1", "bioproject": "PRJEB51895", "biosample": "SAMEA14080882", "wgs_master": "CALBLK000000000.1", "refseq_category": "na", "taxid": "159272", "species_taxid": "159272", "organism_name": "uncultured Prevotella sp.", "infraspecific_name": "", "isolate": "SRR1747054_bin.76_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR1747054_bin.76_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/895/845/GCA_937895845.1_SRR1747054_bin.76_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Prevotella sp." ], "sample_taxid": [ "159272" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Kenya" ], "sample_host_location_id": [], "data_size": "0.778 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2729427", "Number of Sequences": "82", "Longest Sequences (bp)": "188714", "N50 (bp)": "57798", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.7", "Number of CDSs": "2096", "Average Protein Length": "379.1", "Coding Ratio (%)": "87.3", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella dentalis", "strain": "strain=DSM 3688", "accession": "GCA_000220215.1", "taxid": 52227, "species_taxid": 52227, "relation_to_type": "type", "validated": true, "ani": 77.8286, "matched_fragments": 162, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentalis", "strain": "strain=DSM 3688", "accession": "GCA_000242335.3", "taxid": 52227, "species_taxid": 52227, "relation_to_type": "type", "validated": true, "ani": 77.8236, "matched_fragments": 161, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella seregens", "strain": "strain=ATCC 51272", "accession": "GCA_000518545.1", "taxid": 52229, "species_taxid": 52229, "relation_to_type": "type", "validated": true, "ani": 77.6844, "matched_fragments": 170, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 77.1214, "matched_fragments": 124, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=JCM 13447", "accession": "GCA_000613565.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 77.0665, "matched_fragments": 127, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9695, "matched_fragments": 107, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 76.9591, "matched_fragments": 143, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=DSM 16972", "accession": "GCA_000426585.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 76.9397, "matched_fragments": 127, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 76.8775, "matched_fragments": 132, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lascolaii", "strain": "strain=khD1", "accession": "GCA_900079775.1", "taxid": 1776379, "species_taxid": 1776379, "relation_to_type": "type", "validated": true, "ani": 76.7523, "matched_fragments": 111, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sodaliphilus pleomorphus", "strain": "strain=Oil-RF-744-WCA-WT-10", "accession": "GCA_009696565.1", "taxid": 2606626, "species_taxid": 2606626, "relation_to_type": "type", "validated": true, "ani": 76.6533, "matched_fragments": 73, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sodaliphilus pleomorphus", "strain": "strain=Oil-RF-744-WCA-WT-10", "accession": "GCA_009676955.1", "taxid": 2606626, "species_taxid": 2606626, "relation_to_type": "type", "validated": true, "ani": 76.6244, "matched_fragments": 74, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter muris", "strain": "strain=PMUR", "accession": "GCA_013166605.1", "taxid": 2736290, "species_taxid": 2736290, "relation_to_type": "type", "validated": true, "ani": 76.1781, "matched_fragments": 64, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 75.8405, "matched_fragments": 85, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella maculosa", "strain": "strain=DSM 19339", "accession": "GCA_000382385.1", "taxid": 439703, "species_taxid": 439703, "relation_to_type": "type", "validated": true, "ani": 75.5134, "matched_fragments": 54, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella maculosa", "strain": "strain=JCM 15638", "accession": "GCA_000613965.1", "taxid": 439703, "species_taxid": 439703, "relation_to_type": "type", "validated": true, "ani": 75.4958, "matched_fragments": 53, "total_fragments": 872, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016899955.1", "gtdb_species": "s__Prevotella sp900540415", "ani": 78.5276, "matched_fragments": 246, "total_fragments": 872, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_905216025.1", "gtdb_species": "s__Prevotella sp905216025", "ani": 78.413, "matched_fragments": 221, "total_fragments": 872, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.83", "min_intra_species_ani": "95.83", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902775475.1", "gtdb_species": "s__Prevotella sp902775475", "ani": 78.4056, "matched_fragments": 225, "total_fragments": 872, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.51", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 7, "status": "-" }, { 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sp900318915", "ani": 77.9467, "matched_fragments": 179, "total_fragments": 872, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.05", "min_intra_species_ani": "95.26", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.81", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_017847725.1", "gtdb_species": "s__Prevotella sp017847725", "ani": 77.9394, "matched_fragments": 136, "total_fragments": 872, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900549175.1", "gtdb_species": "s__Prevotella sp900549175", "ani": 77.928, "matched_fragments": 193, 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