{ "type": "genome", "identifier": "GCA_937898535.1", "organism": "uncultured Sphingomonadales bacterium", "title": "uncultured Sphingomonadales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937898535.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14082405", "wgs_master": "CALDKP000000000.1", "refseq_category": "na", "taxid": "293405", "species_taxid": "293405", "organism_name": "uncultured Sphingomonadales bacterium", "infraspecific_name": "", "isolate": "SRR6231197_bin.50_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR6231197_bin.50_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/898/535/GCA_937898535.1_SRR6231197_bin.50_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "freshwater metagenome" ], "sample_taxid": [ "449393" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hangzhou" ], "sample_host_location_id": [], "data_size": "0.726 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.07, "contamination": 6.94, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2535271", "Number of Sequences": "427", "Longest Sequences (bp)": "33322", "N50 (bp)": "8047", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.2", "Number of CDSs": "2216", "Average Protein Length": "280.8", "Coding Ratio (%)": "73.6", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingorhabdus rigui", "strain": "strain=DSM 29050", "accession": "GCA_014196595.1", "taxid": 1282858, "species_taxid": 1282858, "relation_to_type": "type", "validated": true, "ani": 92.0283, "matched_fragments": 513, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus wooponensis", "strain": "strain=03SU3-P", "accession": "GCA_003933235.1", "taxid": 940136, "species_taxid": 940136, "relation_to_type": "type", "validated": true, "ani": 80.2577, "matched_fragments": 328, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus lacus", "strain": "strain=IMCC1753", "accession": "GCA_009768975.1", "taxid": 392610, "species_taxid": 392610, "relation_to_type": "type", "validated": true, "ani": 78.81, "matched_fragments": 273, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus profundilacus", "strain": "strain=IMCC26285", "accession": "GCA_009769755.1", "taxid": 2509718, "species_taxid": 2509718, "relation_to_type": "type", "validated": true, "ani": 78.2799, "matched_fragments": 245, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus contaminans", "strain": "strain=KCTC32445", "accession": "GCA_007280415.1", "taxid": 1343899, "species_taxid": 1343899, "relation_to_type": "type", "validated": true, "ani": 78.2453, "matched_fragments": 251, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus pulchriflava", "strain": "strain=GY_G", "accession": "GCA_003367235.1", "taxid": 2292257, "species_taxid": 2292257, "relation_to_type": "type", "validated": true, "ani": 77.5558, "matched_fragments": 131, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lentum", "strain": "strain=NBRC 107847", "accession": "GCA_001590965.1", "taxid": 145287, "species_taxid": 145287, "relation_to_type": "type", "validated": true, "ani": 76.5695, "matched_fragments": 50, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium umbonatum", "strain": "strain=FSY-9", "accession": "GCA_004005905.1", "taxid": 1908524, "species_taxid": 1908524, "relation_to_type": "type", "validated": true, "ani": 76.5641, "matched_fragments": 55, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium xixiisoli", "strain": "strain=S36", "accession": "GCA_009827305.1", "taxid": 1476466, "species_taxid": 1476466, "relation_to_type": "type", "validated": true, "ani": 76.2474, "matched_fragments": 60, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium xenophagum", "strain": "strain=NBRC 107872", "accession": "GCA_000367345.1", "taxid": 121428, "species_taxid": 121428, "relation_to_type": "type", "validated": true, "ani": 76.1663, "matched_fragments": 86, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas colocasiae", "strain": "strain=JCM 31229", "accession": "GCA_019880585.1", "taxid": 1848973, "species_taxid": 1848973, "relation_to_type": "type", "validated": true, "ani": 75.9902, "matched_fragments": 66, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium indicum", "strain": "strain=B90A", "accession": "GCA_000264945.2", "taxid": 332055, "species_taxid": 332055, "relation_to_type": "type", "validated": true, "ani": 75.8302, "matched_fragments": 69, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.07, "contamination": 6.94, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_002282385.1", "gtdb_species": "s__Sphingorhabdus_B sp002282385", "ani": 92.1646, "matched_fragments": 480, "total_fragments": 623, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingorhabdus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014196595.1", "gtdb_species": "s__Sphingorhabdus_B rigui", "ani": 92.0283, 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