{ "type": "genome", "identifier": "GCA_937898685.1", "organism": "uncultured Gammaproteobacteria bacterium", "title": "uncultured Gammaproteobacteria bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937898685.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14082009", "wgs_master": "CALEJT000000000.1", "refseq_category": "na", "taxid": "86473", "species_taxid": "86473", "organism_name": "uncultured Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "SRR4028131_bin.63_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "SRR4028131_bin.63_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/898/685/GCA_937898685.1_SRR4028131_bin.63_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Gammaproteobacteria bacterium" ], "sample_taxid": [ "86473" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.996 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3526779", "Number of Sequences": "94", "Longest Sequences (bp)": "255981", "N50 (bp)": "76335", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.7", "Number of CDSs": "3021", "Average Protein Length": "344.6", "Coding Ratio (%)": "88.5", "Number of rRNAs": "1", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas songnenensis", "strain": "strain=DSM 27560T", "accession": "GCA_024448495.1", "taxid": 1176259, "species_taxid": 1176259, "relation_to_type": "type", "validated": true, "ani": 77.0798, "matched_fragments": 71, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas songnenensis", "strain": "strain=NEAU-ST5-5", "accession": "GCA_003696315.1", "taxid": 1176259, "species_taxid": 1176259, "relation_to_type": "type", "validated": true, "ani": 76.9826, "matched_fragments": 74, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8763, "matched_fragments": 98, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_024448505.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "type", "validated": true, "ani": 76.8761, "matched_fragments": 97, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 76.8428, "matched_fragments": 114, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas taiwanensis", "strain": "strain=DSM 22914", "accession": "GCA_010093135.1", "taxid": 176598, "species_taxid": 176598, "relation_to_type": "type", "validated": true, "ani": 76.7564, "matched_fragments": 68, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 76.7502, "matched_fragments": 116, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas bharatica", "strain": "strain=CSV86", "accession": "GCA_000319305.2", "taxid": 2692112, "species_taxid": 2692112, "relation_to_type": "type", "validated": true, "ani": 76.73, "matched_fragments": 92, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] nosocomialis", "strain": "strain=A31/70", "accession": "GCA_005876855.1", "taxid": 1056496, "species_taxid": 1056496, "relation_to_type": "type", "validated": true, "ani": 76.6278, "matched_fragments": 93, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas indica", "strain": "strain=NBRC 103045", "accession": "GCA_002091635.1", "taxid": 137658, "species_taxid": 137658, "relation_to_type": "type", "validated": true, "ani": 76.6244, "matched_fragments": 104, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 76.6138, "matched_fragments": 117, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas indica", "strain": "strain=JCM 21544", "accession": "GCA_900100285.1", "taxid": 137658, "species_taxid": 137658, "relation_to_type": "type", "validated": true, "ani": 76.5816, "matched_fragments": 102, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 76.5085, "matched_fragments": 145, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ilicicola", "strain": "strain=DSM 19980", "accession": "GCA_900128925.1", "taxid": 480814, "species_taxid": 480814, "relation_to_type": "type", "validated": true, "ani": 76.4547, "matched_fragments": 58, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nicosulfuronedens", "strain": "strain=LAM1902", "accession": "GCA_005877905.1", "taxid": 2571105, "species_taxid": 2571105, "relation_to_type": "type", "validated": true, "ani": 76.436, "matched_fragments": 123, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas inefficax", "strain": "strain=JV551A3", "accession": "GCA_900277125.1", "taxid": 2078786, "species_taxid": 2078786, "relation_to_type": "type", "validated": true, "ani": 76.3827, "matched_fragments": 90, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.3822, "matched_fragments": 113, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 76.3766, "matched_fragments": 84, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 76.3498, "matched_fragments": 69, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_012987025.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.3407, "matched_fragments": 112, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas matsuisoli", "strain": "strain=JCM 30078", "accession": "GCA_014647635.1", "taxid": 1515666, "species_taxid": 1515666, "relation_to_type": "type", "validated": true, "ani": 76.3296, "matched_fragments": 51, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas borbori", "strain": "strain=DSM 17834", "accession": "GCA_900115555.1", "taxid": 289003, "species_taxid": 289003, "relation_to_type": "type", "validated": true, "ani": 76.319, "matched_fragments": 84, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_900167195.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.3049, "matched_fragments": 110, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella telluris", "strain": "strain=G9", "accession": "GCA_014297575.1", "taxid": 2763498, "species_taxid": 2763498, "relation_to_type": "type", "validated": true, "ani": 76.2722, "matched_fragments": 70, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas argentinensis", "strain": "strain=CCUG 50743", "accession": "GCA_008801645.1", "taxid": 289370, "species_taxid": 289370, "relation_to_type": "type", "validated": true, "ani": 76.2214, "matched_fragments": 106, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas salomonii", "strain": "strain=ICMP 14252", "accession": "GCA_900107155.1", "taxid": 191391, "species_taxid": 191391, "relation_to_type": "type", "validated": true, "ani": 76.0139, "matched_fragments": 73, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas salomonii", "strain": "strain=LMG 22120", "accession": "GCA_001730645.1", "taxid": 191391, "species_taxid": 191391, "relation_to_type": "type", "validated": true, "ani": 76.0074, "matched_fragments": 75, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas libanensis", "strain": "strain=DSM 17149", "accession": "GCA_001439685.1", "taxid": 75588, "species_taxid": 75588, "relation_to_type": "type", "validated": true, "ani": 75.8263, "matched_fragments": 71, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas broegbernensis", "strain": "strain=DSM 12573", "accession": "GCA_014202435.1", "taxid": 83619, "species_taxid": 83619, "relation_to_type": "type", "validated": true, "ani": 75.6498, "matched_fragments": 66, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas broegbernensis", "strain": "strain=DSM 12573", "accession": "GCA_010093165.1", "taxid": 83619, "species_taxid": 83619, "relation_to_type": "type", "validated": true, "ani": 75.6498, "matched_fragments": 66, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903887045.1", "gtdb_species": "s__CAILUG01 sp903887045", "ani": 77.2992, "matched_fragments": 205, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__CAILUG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003696315.1", "gtdb_species": "s__Pseudomonas_A songnenensis", "ani": 76.9826, "matched_fragments": 74, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.36", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000341615.1", "gtdb_species": "s__Pseudomonas_A stutzeri_G", "ani": 76.8579, "matched_fragments": 88, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.57", "min_intra_species_ani": "97.27", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000364625.1", "gtdb_species": "s__Pseudomonas_E thermotolerans", "ani": 76.8428, "matched_fragments": 114, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.25", "min_intra_species_ani": "99.24", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903853385.1", "gtdb_species": "s__CAILUG01 sp903853385", "ani": 76.8274, "matched_fragments": 144, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__CAILUG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.57", "min_intra_species_ani": "99.54", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_010093135.1", "gtdb_species": "s__Pseudoxanthomonas taiwanensis", "ani": 76.7858, "matched_fragments": 67, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "99.04", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001945395.1", "gtdb_species": "s__Pseudomonas_E sp001945395", "ani": 76.7718, "matched_fragments": 103, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017589465.1", "gtdb_species": "s__Pseudomonas sp017589465", "ani": 76.7473, "matched_fragments": 118, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903837345.1", "gtdb_species": "s__CAILUG01 sp903837345", "ani": 76.7473, "matched_fragments": 167, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__CAILUG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000319305.2", "gtdb_species": "s__Pseudomonas_E putida_C", "ani": 76.73, "matched_fragments": 92, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005508865.1", "gtdb_species": "s__Pseudomonas_E sp005508865", "ani": 76.7275, "matched_fragments": 127, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003696305.1", "gtdb_species": "s__Pseudomonas_E sp003696305", "ani": 76.6802, "matched_fragments": 119, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003205495.1", "gtdb_species": "s__Pseudomonas_E alcaligenes_B", "ani": 76.6436, "matched_fragments": 121, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002091635.1", "gtdb_species": "s__Pseudomonas_M indica", "ani": 76.6244, "matched_fragments": 104, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_M", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.73", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_907163115.1", "gtdb_species": "s__Pseudomonas_A 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