{
    "type": "genome",
    "identifier": "GCA_937900015.1",
    "organism": "uncultured Rhodospirillaceae bacterium",
    "title": "uncultured Rhodospirillaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_937900015.1",
        "bioproject": "PRJEB51078",
        "biosample": "SAMEA14075488",
        "wgs_master": "CALCCN000000000.1",
        "refseq_category": "na",
        "taxid": "352351",
        "species_taxid": "352351",
        "organism_name": "uncultured Rhodospirillaceae bacterium",
        "infraspecific_name": "",
        "isolate": "SRR3933245_bin.42_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/11",
        "asm_name": "SRR3933245_bin.42_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/900/015/GCA_937900015.1_SRR3933245_bin.42_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-11",
    "dateModified": "2023-01-11",
    "datePublished": "2023-01-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Rhodospirillaceae bacterium"
        ],
        "sample_taxid": [
            "352351"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada"
        ],
        "sample_host_location_id": [],
        "data_size": "1.079 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 9.9,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3742236",
        "Number of Sequences": "652",
        "Longest Sequences (bp)": "47964",
        "N50 (bp)": "7216",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.5",
        "Number of CDSs": "3645",
        "Average Protein Length": "263.3",
        "Coding Ratio (%)": "76.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 9.9,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002389385.1",
                "gtdb_species": "s__UBA4479 sp002389385",
                "ani": 98.7859,
                "matched_fragments": 638,
                "total_fragments": 908,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__UBA4479",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.57",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002389175.1",
                "gtdb_species": "s__UBA4479 sp002389175",
                "ani": 77.2583,
                "matched_fragments": 77,
                "total_fragments": 908,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__UBA4479",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017640505.1",
                "gtdb_species": "s__UBA4479 sp017640505",
                "ani": 76.4333,
                "matched_fragments": 62,
                "total_fragments": 908,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__UBA4479",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017644185.1",
                "gtdb_species": "s__UBA4479 sp017644185",
                "ani": 76.2947,
                "matched_fragments": 68,
                "total_fragments": 908,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__UBA4479",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.124,
        "cell_length": 0.412,
        "doubling_h": 0.931,
        "growth_tmp": 29.068,
        "optimum_tmp": 30.167,
        "optimum_ph": 7.012,
        "genome_size": 4958622.479,
        "gc_content": 62.84,
        "coding_genes": 4573.287,
        "rRNA16S_genes": 4.82,
        "tRNA_genes": 64.75,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.839,
        "range_salinity": 0.666,
        "facultative_respiration": 0.174,
        "anaerobic_respiration": 0.158,
        "aerobic_respiration": 0.666,
        "mesophilic_range_tmp": 0.916,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.083,
        "bacillus_cell_shape": 0.509,
        "coccus_cell_shape": 0.018,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.036,
        "spiral_cell_shape": 0.436
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodospirillales_A",
        "f__Casp-alpha2",
        "g__UBA4479",
        "s__UBA4479 sp002389385"
    ],
    "_genome_taxon": [
        "uncultured",
        "Rhodospirillaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodospirillales_A",
        "f__Casp-alpha2",
        "g__UBA4479",
        "s__UBA4479 sp002389385",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhodospirillales",
        "A",
        "Casp-alpha2",
        "UBA4479",
        "UBA4479",
        "sp002389385"
    ],
    "_meo": [
        {
            "id": "MEO_0000023",
            "label": "sea"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}