{ "type": "genome", "identifier": "GCA_937901435.1", "organism": "uncultured Rhodobacter sp.", "title": "uncultured Rhodobacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937901435.1", "bioproject": "PRJEB51078", "biosample": "SAMEA14074696", "wgs_master": "CALGTJ000000000.1", "refseq_category": "na", "taxid": "204728", "species_taxid": "204728", "organism_name": "uncultured Rhodobacter sp.", "infraspecific_name": "", "isolate": "ERR2206751_bin.112_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "ERR2206751_bin.112_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/901/435/GCA_937901435.1_ERR2206751_bin.112_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rhodobacter sp." ], "sample_taxid": [ "204728" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Baltic Sea" ], "sample_host_location_id": [], "data_size": "1.538 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.22, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5401245", "Number of Sequences": "844", "Longest Sequences (bp)": "72135", "N50 (bp)": "8521", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.4", "Number of CDSs": "4700", "Average Protein Length": "296.4", "Coding Ratio (%)": "77.4", "Number of rRNAs": "0", "Number of tRNAs": "23", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceaniglobus trochenteri", "strain": "strain=G4", "accession": "GCA_020529025.1", "taxid": 2763260, "species_taxid": 2763260, "relation_to_type": "type", "validated": true, "ani": 77.077, "matched_fragments": 219, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium mucosum", "strain": "strain=KCTC 23349", "accession": "GCA_000647975.1", "taxid": 1087332, "species_taxid": 1087332, "relation_to_type": "type", "validated": true, "ani": 77.0728, "matched_fragments": 174, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium sediminis", "strain": "strain=S4J41", "accession": "GCA_004348975.1", "taxid": 2546227, "species_taxid": 2546227, "relation_to_type": "type", "validated": true, "ani": 77.066, "matched_fragments": 222, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 76.9895, "matched_fragments": 195, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 76.9742, "matched_fragments": 183, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 76.9593, "matched_fragments": 235, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 76.9385, "matched_fragments": 237, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marina", "strain": "strain=CGMCC 1.9108", "accession": "GCA_900101475.1", "taxid": 639004, "species_taxid": 639004, "relation_to_type": "type", "validated": true, "ani": 76.913, "matched_fragments": 194, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 76.909, "matched_fragments": 196, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoprimorskyibacter insulae", "strain": "strain=CECT 8871", "accession": "GCA_900302505.1", "taxid": 1695997, "species_taxid": 1695997, "relation_to_type": "type", "validated": true, "ani": 76.8983, "matched_fragments": 188, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 76.8519, "matched_fragments": 240, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litorisediminis", "strain": "strain=CECT 8287", "accession": "GCA_900172295.1", "taxid": 1312363, "species_taxid": 1312363, "relation_to_type": "type", "validated": true, "ani": 76.8277, "matched_fragments": 157, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter mediterraneus", "strain": "strain=DSM 12244", "accession": "GCA_003054325.1", "taxid": 83219, "species_taxid": 83219, "relation_to_type": "type", "validated": true, "ani": 76.8206, "matched_fragments": 172, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 76.7861, "matched_fragments": 161, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificitalea manganoxidans", "strain": "strain=DY25", "accession": "GCA_002504165.1", "taxid": 1411902, "species_taxid": 1411902, "relation_to_type": "type", "validated": true, "ani": 76.7851, "matched_fragments": 196, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius autumnalis", "strain": "strain=CECT 5118", "accession": "GCA_001458255.1", "taxid": 2072972, "species_taxid": 2072972, "relation_to_type": "type", "validated": true, "ani": 76.7661, "matched_fragments": 161, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus limosus", "strain": "strain=JCM 17370", "accession": "GCA_009711185.1", "taxid": 913252, "species_taxid": 913252, "relation_to_type": "type", "validated": true, "ani": 76.7541, "matched_fragments": 164, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum robiginosum", "strain": "strain=DSM 12329", "accession": "GCA_003944755.1", "taxid": 68292, "species_taxid": 68292, "relation_to_type": "type", "validated": true, "ani": 76.7516, "matched_fragments": 214, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=HEL-45", "accession": "GCA_000172095.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 76.7175, "matched_fragments": 159, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 76.713, "matched_fragments": 214, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum veldkampii", "strain": "strain=DSM 11550", "accession": "GCA_016653435.1", "taxid": 33049, "species_taxid": 33049, "relation_to_type": "type", "validated": true, "ani": 76.7061, "matched_fragments": 175, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius aestuariivivens", "strain": "strain=GHTF-24", "accession": "GCA_004761875.1", "taxid": 1888910, "species_taxid": 1888910, "relation_to_type": "type", "validated": true, "ani": 76.6861, "matched_fragments": 151, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum veldkampii", "strain": "strain=DSM 11550", "accession": "GCA_004363195.1", "taxid": 33049, "species_taxid": 33049, "relation_to_type": "type", "validated": true, "ani": 76.678, "matched_fragments": 181, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum veldkampii", "strain": "strain=DSM 11550", "accession": "GCA_003034995.1", "taxid": 33049, "species_taxid": 33049, "relation_to_type": "type", "validated": true, "ani": 76.6706, "matched_fragments": 181, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.6522, "matched_fragments": 200, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius faecimaris", "strain": "strain=MME-070", "accession": "GCA_009762325.1", "taxid": 2494550, "species_taxid": 2494550, "relation_to_type": "type", "validated": true, "ani": 76.6497, "matched_fragments": 206, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter aestuariivivens", "strain": "strain=TSTF-M16", "accession": "GCA_014763045.1", "taxid": 2766981, "species_taxid": 2766981, "relation_to_type": "type", "validated": true, "ani": 76.6137, "matched_fragments": 166, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassococcus halodurans", "strain": "strain=DSM 26915", "accession": "GCA_900108225.1", "taxid": 373675, "species_taxid": 373675, "relation_to_type": "type", "validated": true, "ani": 76.5811, "matched_fragments": 148, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salibaculum halophilum", "strain": "strain=WDS1C4", "accession": "GCA_002094885.1", "taxid": 1914408, "species_taxid": 1914408, "relation_to_type": "type", "validated": true, "ani": 76.5318, "matched_fragments": 146, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia sediminis", "strain": "strain=ZQ172", "accession": "GCA_003990645.1", "taxid": 2497945, "species_taxid": 2497945, "relation_to_type": "type", "validated": true, "ani": 76.5256, "matched_fragments": 182, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 76.4762, "matched_fragments": 136, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 76.4643, "matched_fragments": 144, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lutimaris", "strain": "strain=CECT 8525", "accession": "GCA_003337565.1", "taxid": 1490030, "species_taxid": 1490030, "relation_to_type": "type", "validated": true, "ani": 76.4429, "matched_fragments": 164, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 76.3012, "matched_fragments": 135, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.22, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002684375.1", "gtdb_species": "s__CPC320 sp002684375", "ani": 77.9324, "matched_fragments": 60, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__CPC320", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.26", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.72", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_014196965.1", "gtdb_species": "s__Actibacterium_A naphthalenivorans", "ani": 77.3177, "matched_fragments": 220, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Actibacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000620505.1", "gtdb_species": "s__Ascidiaceihabitans sp000620505", "ani": 77.2356, "matched_fragments": 238, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ascidiaceihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002285435.1", "gtdb_species": "s__Actibacterium ureilyticum", "ani": 77.1532, "matched_fragments": 259, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Actibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004348975.1", "gtdb_species": "s__Antarcticimicrobium sediminis", "ani": 77.0779, "matched_fragments": 221, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Antarcticimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000647975.1", "gtdb_species": "s__Actibacterium mucosum", "ani": 77.0728, "matched_fragments": 174, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Actibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013003075.1", "gtdb_species": "s__IMCC34051 sp013003075", "ani": 77.0529, "matched_fragments": 117, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__IMCC34051", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000011965.2", "gtdb_species": "s__Ruegeria_B pomeroyi", "ani": 77.0528, "matched_fragments": 286, "total_fragments": 1353, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Actibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129395.1", "gtdb_species": "s__Ascidiaceihabitans pseudonitzschiae", "ani": 76.9385, "matched_fragments": 237, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ascidiaceihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000744325.1", "gtdb_species": "s__Roseovarius sp000744325", "ani": 76.9206, "matched_fragments": 199, "total_fragments": 1353, "gtdb_taxonomy": 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