{ "type": "genome", "identifier": "GCA_937905815.1", "organism": "uncultured Candidatus Saccharibacteria bacterium", "title": "uncultured Candidatus Saccharibacteria bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937905815.1", "bioproject": "PRJEB50943", "biosample": "SAMEA14075710", "wgs_master": "CALCXH000000000.1", "refseq_category": "na", "taxid": "179883", "species_taxid": "179883", "organism_name": "uncultured Candidatus Saccharibacteria bacterium", "infraspecific_name": "", "isolate": "SRR1952503_bin.48_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "SRR1952503_bin.48_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/905/815/GCA_937905815.1_SRR1952503_bin.48_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Candidatus Saccharibacteria bacterium" ], "sample_taxid": [ "179883" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.217 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 82.87, "contamination": 1.22, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "751804", "Number of Sequences": "119", "Longest Sequences (bp)": "30523", "N50 (bp)": "7878", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.6", "Number of CDSs": "586", "Average Protein Length": "315.4", "Coding Ratio (%)": "73.7", "Number of rRNAs": "1", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 82.87, "contamination": 1.22, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013332965.2", "gtdb_species": "s__Nanosyncoccus sp013332965", "ani": 95.1167, "matched_fragments": 169, "total_fragments": 196, "gtdb_taxonomy": "d__Bacteria;p__Patescibacteria;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.45", "min_intra_species_ani": "95.20", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015257455.1", "gtdb_species": "s__Nanosyncoccus sp015257455", "ani": 77.8051, "matched_fragments": 51, "total_fragments": 196, "gtdb_taxonomy": "d__Bacteria;p__Patescibacteria;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013333135.2", "gtdb_species": "s__Nanosyncoccus sp013333135", "ani": 77.7621, "matched_fragments": 59, "total_fragments": 196, "gtdb_taxonomy": "d__Bacteria;p__Patescibacteria;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007845165.1", "gtdb_species": "s__Nanosyncoccus sp007845165", "ani": 77.7568, "matched_fragments": 55, "total_fragments": 196, "gtdb_taxonomy": "d__Bacteria;p__Patescibacteria;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Patescibacteria", "c__Saccharimonadia", "o__Saccharimonadales", "f__Nanosyncoccaceae", "g__Nanosyncoccus", "s__Nanosyncoccus sp016112465" ], "_genome_taxon": [ "uncultured", "Candidatus", "Saccharibacteria", "bacterium", "d__Bacteria", "p__Patescibacteria", "c__Saccharimonadia", "o__Saccharimonadales", "f__Nanosyncoccaceae", "g__Nanosyncoccus", "s__Nanosyncoccus sp016112465", "Bacteria", "Patescibacteria", "Saccharimonadia", "Saccharimonadales", "Nanosyncoccaceae", "Nanosyncoccus", "Nanosyncoccus", "sp016112465" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }