{ "type": "genome", "identifier": "GCA_937910285.1", "organism": "uncultured Myxococcales bacterium", "title": "uncultured Myxococcales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937910285.1", "bioproject": "PRJEB51073", "biosample": "SAMEA14037326", "wgs_master": "CALEOC000000000.1", "refseq_category": "na", "taxid": "253830", "species_taxid": "253830", "organism_name": "uncultured Myxococcales bacterium", "infraspecific_name": "", "isolate": "SRR1561992_bin.48_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "SRR1561992_bin.48_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/910/285/GCA_937910285.1_SRR1561992_bin.48_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Myxococcales bacterium" ], "sample_taxid": [ "253830" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.088 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7668023", "Number of Sequences": "303", "Longest Sequences (bp)": "154816", "N50 (bp)": "42584", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.5", "Number of CDSs": "5808", "Average Protein Length": "352.0", "Coding Ratio (%)": "80.0", "Number of rRNAs": "0", "Number of tRNAs": "57", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 76.1514, "matched_fragments": 341, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella aurantiaca", "strain": "strain=DSM 17044", "accession": "GCA_900109545.1", "taxid": 41, "species_taxid": 41, "relation_to_type": "type", "validated": true, "ani": 76.1163, "matched_fragments": 329, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 76.0373, "matched_fragments": 467, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus stipitatus", "strain": "strain=DSM 14675", "accession": "GCA_000331735.1", "taxid": 83455, "species_taxid": 83455, "relation_to_type": "neotype", "validated": true, "ani": 75.9737, "matched_fragments": 339, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium violaceum", "strain": "strain=Cb vi76", "accession": "GCA_000733295.1", "taxid": 83451, "species_taxid": 83451, "relation_to_type": "type", "validated": true, "ani": 75.9337, "matched_fragments": 407, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_001027285.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 75.92, "matched_fragments": 429, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus fallax", "strain": "strain=DSM 14698", "accession": "GCA_012933655.1", "taxid": 394095, "species_taxid": 394095, "relation_to_type": "type", "validated": true, "ani": 75.9155, "matched_fragments": 435, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_003387095.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 75.915, "matched_fragments": 430, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 75.8278, "matched_fragments": 344, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=DSM 16525", "accession": "GCA_900111765.1", "taxid": 33, "species_taxid": 33, "relation_to_type": "type", "validated": true, "ani": 75.815, "matched_fragments": 394, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=NBRC 100333", "accession": "GCA_007991095.1", "taxid": 33, "species_taxid": 33, "relation_to_type": "type", "validated": true, "ani": 75.809, "matched_fragments": 399, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus llansteffanensis", "strain": "strain=CA051B", "accession": "GCA_003612055.1", "taxid": 2316731, "species_taxid": 2316731, "relation_to_type": "type", "validated": true, "ani": 75.8081, "matched_fragments": 351, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 75.8055, "matched_fragments": 341, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas kaohsiungensis", "strain": "strain=DSM 17583", "accession": "GCA_010211765.1", "taxid": 283923, "species_taxid": 283923, "relation_to_type": "type", "validated": true, "ani": 75.2101, "matched_fragments": 129, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 75.1364, "matched_fragments": 149, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas helianthi", "strain": "strain=110414", "accession": "GCA_017939625.1", "taxid": 1453541, "species_taxid": 1453541, "relation_to_type": "type", "validated": true, "ani": 75.1232, "matched_fragments": 91, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000420125.1", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 75.1172, "matched_fragments": 230, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 75.1002, "matched_fragments": 218, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oleiagrimonas soli", "strain": "strain=3.5X", "accession": "GCA_000761445.1", "taxid": 1543381, "species_taxid": 1543381, "relation_to_type": "type", "validated": true, "ani": 75.0744, "matched_fragments": 109, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas nitritireducens", "strain": "strain=DSM 12575", "accession": "GCA_001431425.1", "taxid": 83617, "species_taxid": 83617, "relation_to_type": "type", "validated": true, "ani": 75.0248, "matched_fragments": 129, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 75.0164, "matched_fragments": 148, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 75.0122, "matched_fragments": 130, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_008801845.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 75.0037, "matched_fragments": 126, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 74.9965, "matched_fragments": 132, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum brasilense", "strain": "strain=Sp 7", "accession": "GCA_007827425.1", "taxid": 192, "species_taxid": 192, "relation_to_type": "type", "validated": true, "ani": 74.9858, "matched_fragments": 161, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum brasilense", "strain": "strain=Sp 7", "accession": "GCA_002027385.1", "taxid": 192, "species_taxid": 192, "relation_to_type": "type", "validated": true, "ani": 74.948, "matched_fragments": 155, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum picis", "strain": "strain=IMMIB TAR-3", "accession": "GCA_017876115.1", "taxid": 488438, "species_taxid": 488438, "relation_to_type": "type", "validated": true, "ani": 74.9347, "matched_fragments": 214, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sandaracinus amylolyticus", "strain": "strain=DSM 53668", "accession": "GCA_000737325.2", "taxid": 927083, "species_taxid": 927083, "relation_to_type": "type", "validated": true, "ani": 74.9305, "matched_fragments": 575, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella livida", "strain": "strain=TBM-1", "accession": "GCA_010499455.1", "taxid": 2707176, "species_taxid": 2707176, "relation_to_type": "type", "validated": true, "ani": 74.9205, "matched_fragments": 121, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera soli", "strain": "strain=JC670", "accession": "GCA_011064595.1", "taxid": 2712865, "species_taxid": 2712865, "relation_to_type": "type", "validated": true, "ani": 74.9118, "matched_fragments": 235, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas aeria", "strain": "strain=CFCC 13393", "accession": "GCA_009760915.1", "taxid": 2590212, "species_taxid": 2590212, "relation_to_type": "type", "validated": true, "ani": 74.911, "matched_fragments": 297, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum rugosum", "strain": "strain=IMMIB AFH-6", "accession": "GCA_017876155.1", "taxid": 416170, "species_taxid": 416170, "relation_to_type": "type", "validated": true, "ani": 74.8846, "matched_fragments": 215, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium tamadayense", "strain": "strain=DSM 28320", "accession": "GCA_003863365.1", "taxid": 425306, "species_taxid": 425306, "relation_to_type": "type", "validated": true, "ani": 74.8824, "matched_fragments": 156, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum soli", "strain": "strain=CC-LY788", "accession": "GCA_017876165.1", "taxid": 1304799, "species_taxid": 1304799, "relation_to_type": "type", "validated": true, "ani": 74.8368, "matched_fragments": 179, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix australiensis", "strain": "strain=DSM 43800", "accession": "GCA_003634935.1", "taxid": 2072, "species_taxid": 2072, "relation_to_type": "type", "validated": true, "ani": 74.8277, "matched_fragments": 283, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 74.7259, "matched_fragments": 337, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Truepera radiovictrix", "strain": "strain=DSM 17093", "accession": "GCA_000092425.1", "taxid": 332249, "species_taxid": 332249, "relation_to_type": "type", "validated": true, "ani": 74.7253, "matched_fragments": 115, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura oligospora", "strain": "strain=ATCC 43269", "accession": "GCA_000518265.1", "taxid": 111804, "species_taxid": 111804, "relation_to_type": "type", "validated": true, "ani": 74.7039, "matched_fragments": 292, "total_fragments": 2416, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002408385.1", "gtdb_species": "s__UBA10939 sp002408385", "ani": 99.9192, "matched_fragments": 2308, "total_fragments": 2416, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__UBA5297;g__UBA10939", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_017500825.1", "gtdb_species": 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