{
    "type": "genome",
    "identifier": "GCA_937913165.1",
    "organism": "Leptotrichia massiliensis",
    "title": "Leptotrichia massiliensis",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_937913165.1",
        "bioproject": "PRJEB50943",
        "biosample": "SAMEA14075741",
        "wgs_master": "CALEMU000000000.1",
        "refseq_category": "na",
        "taxid": "1852388",
        "species_taxid": "1852388",
        "organism_name": "Leptotrichia massiliensis",
        "infraspecific_name": "",
        "isolate": "SRR1952623_bin.28_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/10",
        "asm_name": "SRR1952623_bin.28_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/913/165/GCA_937913165.1_SRR1952623_bin.28_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-10",
    "dateModified": "2023-01-10",
    "datePublished": "2023-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptotrichia massiliensis"
        ],
        "sample_taxid": [
            "1852388"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.722 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 2.03,
        "strain_heterogeneity": 75.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2546979",
        "Number of Sequences": "1088",
        "Longest Sequences (bp)": "17416",
        "N50 (bp)": "2646",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.4",
        "Number of CDSs": "1684",
        "Average Protein Length": "277.8",
        "Coding Ratio (%)": "55.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "16",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Leptotrichia hofstadii",
                "strain": "strain=JCM16775",
                "accession": "GCA_007990525.1",
                "taxid": 157688,
                "species_taxid": 157688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.2286,
                "matched_fragments": 240,
                "total_fragments": 282,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leptotrichia hofstadii",
                "strain": "strain=DSM 21651",
                "accession": "GCA_000428965.1",
                "taxid": 157688,
                "species_taxid": 157688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.0687,
                "matched_fragments": 245,
                "total_fragments": 282,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leptotrichia massiliensis",
                "strain": "strain=Marseille-P3007",
                "accession": "GCA_900104625.1",
                "taxid": 1852388,
                "species_taxid": 1852388,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.4204,
                "matched_fragments": 233,
                "total_fragments": 282,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia buccalis",
                "strain": "strain=DSM 1135",
                "accession": "GCA_000023905.1",
                "taxid": 40542,
                "species_taxid": 40542,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.5248,
                "matched_fragments": 221,
                "total_fragments": 282,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia trevisanii",
                "strain": "strain=DSM 22070",
                "accession": "GCA_000482505.1",
                "taxid": 109328,
                "species_taxid": 109328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.5157,
                "matched_fragments": 230,
                "total_fragments": 282,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia wadei",
                "strain": "strain=DSM 19758",
                "accession": "GCA_000373345.1",
                "taxid": 157687,
                "species_taxid": 157687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.967,
                "matched_fragments": 197,
                "total_fragments": 282,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 2.03,
            "strain_heterogeneity": 75.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007990525.1",
                "gtdb_species": "s__Leptotrichia hofstadii",
                "ani": 95.1439,
                "matched_fragments": 241,
                "total_fragments": 282,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "96.65",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900104625.1",
                "gtdb_species": "s__Leptotrichia massiliensis",
                "ani": 94.4204,
                "matched_fragments": 233,
                "total_fragments": 282,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.80",
                "min_intra_species_ani": "96.21",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000469385.1",
                "gtdb_species": "s__Leptotrichia sp000469385",
                "ani": 91.8546,
                "matched_fragments": 223,
                "total_fragments": 282,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007990635.1",
                "gtdb_species": "s__Leptotrichia hongkongensis",
                "ani": 91.4138,
                "matched_fragments": 217,
                "total_fragments": 282,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000023905.1",
                "gtdb_species": "s__Leptotrichia buccalis",
                "ani": 90.5779,
                "matched_fragments": 220,
                "total_fragments": 282,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000482505.1",
                "gtdb_species": "s__Leptotrichia trevisanii",
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                "total_fragments": 282,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "97.58",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_013394795.1",
                "gtdb_species": "s__Leptotrichia sp013394795",
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                "matched_fragments": 227,
                "total_fragments": 282,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001274535.1",
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                "matched_fragments": 95,
                "total_fragments": 282,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia_A",
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                "mean_intra_species_ani": "97.10",
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                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000469505.1",
                "gtdb_species": "s__Leptotrichia_A sp000469505",
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                "matched_fragments": 89,
                "total_fragments": 282,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_905371725.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.224,
        "cell_length": 0.774,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.2,
        "optimum_ph": null,
        "genome_size": 2416503.738,
        "gc_content": 30.23,
        "coding_genes": 2196.333,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.833,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Fusobacteriota",
        "c__Fusobacteriia",
        "o__Fusobacteriales",
        "f__Leptotrichiaceae",
        "g__Leptotrichia",
        "s__Leptotrichia hofstadii"
    ],
    "_genome_taxon": [
        "Leptotrichia",
        "massiliensis",
        "d__Bacteria",
        "p__Fusobacteriota",
        "c__Fusobacteriia",
        "o__Fusobacteriales",
        "f__Leptotrichiaceae",
        "g__Leptotrichia",
        "s__Leptotrichia hofstadii",
        "Bacteria",
        "Fusobacteriota",
        "Fusobacteriia",
        "Fusobacteriales",
        "Leptotrichiaceae",
        "Leptotrichia",
        "Leptotrichia",
        "hofstadii"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}