{ "type": "genome", "identifier": "GCA_937914765.1", "organism": "uncultured Veillonella sp.", "title": "uncultured Veillonella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937914765.1", "bioproject": "PRJEB50943", "biosample": "SAMEA14075815", "wgs_master": "CALDNS000000000.1", "refseq_category": "na", "taxid": "159268", "species_taxid": "159268", "organism_name": "uncultured Veillonella sp.", "infraspecific_name": "", "isolate": "SRR2240918_bin.21_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR2240918_bin.21_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/914/765/GCA_937914765.1_SRR2240918_bin.21_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Veillonella sp." ], "sample_taxid": [ "159268" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.624 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2177883", "Number of Sequences": "153", "Longest Sequences (bp)": "184861", "N50 (bp)": "29501", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.0", "Number of CDSs": "1966", "Average Protein Length": "298.0", "Coding Ratio (%)": "80.7", "Number of rRNAs": "1", "Number of tRNAs": "33", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Veillonella rogosae", "strain": "strain=JCM 15642", "accession": "GCA_001312485.1", "taxid": 423477, "species_taxid": 423477, "relation_to_type": "type", "validated": true, "ani": 96.5894, "matched_fragments": 552, "total_fragments": 650, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella rogosae", "strain": "strain=JCM 15642", "accession": "GCA_002959775.1", "taxid": 423477, "species_taxid": 423477, "relation_to_type": "type", "validated": true, "ani": 96.5594, "matched_fragments": 568, "total_fragments": 650, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella nakazawae", "strain": "strain=T1-7", "accession": "GCA_013393365.1", "taxid": 2682456, "species_taxid": 2682456, "relation_to_type": "type", "validated": true, "ani": 90.0269, "matched_fragments": 545, "total_fragments": 650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella infantium", "strain": "strain=T11011-4", "accession": "GCA_002959895.1", "taxid": 1911679, "species_taxid": 1911679, "relation_to_type": "type", "validated": true, "ani": 89.7789, "matched_fragments": 537, "total_fragments": 650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella dispar", "strain": "strain=NCTC11831", "accession": "GCA_900637515.1", "taxid": 39778, "species_taxid": 39778, "relation_to_type": "suspected-type", "validated": true, "ani": 89.1721, "matched_fragments": 528, "total_fragments": 650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella dispar", "strain": "strain=ATCC 17748", "accession": "GCA_000160015.1", "taxid": 39778, "species_taxid": 39778, "relation_to_type": "suspected-type", "validated": true, "ani": 88.9913, "matched_fragments": 526, "total_fragments": 650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella parvula", "strain": "strain=NCTC11810", "accession": "GCA_900186885.1", "taxid": 29466, "species_taxid": 29466, "relation_to_type": "suspected-type", "validated": true, "ani": 87.3226, "matched_fragments": 522, "total_fragments": 650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella parvula", "strain": "strain=DSM 2008", "accession": "GCA_000024945.1", "taxid": 29466, "species_taxid": 29466, "relation_to_type": "suspected-type", "validated": true, "ani": 87.3139, "matched_fragments": 513, "total_fragments": 650, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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"min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013393365.1", "gtdb_species": "s__Veillonella nakazawae", "ani": 90.0269, "matched_fragments": 545, "total_fragments": 650, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.23", "min_intra_species_ani": "95.05", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 33, "status": "-" }, { "accession": "GCF_002959895.1", "gtdb_species": "s__Veillonella infantium", "ani": 89.7789, "matched_fragments": 537, "total_fragments": 650, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.95", "min_intra_species_ani": "95.95", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", 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