{ "type": "genome", "identifier": "GCA_937924705.1", "organism": "uncultured Flavobacterium sp.", "title": "uncultured Flavobacterium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937924705.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14082326", "wgs_master": "CALEVM000000000.1", "refseq_category": "na", "taxid": "165435", "species_taxid": "165435", "organism_name": "uncultured Flavobacterium sp.", "infraspecific_name": "", "isolate": "SRR6231150_bin.55_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "SRR6231150_bin.55_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/924/705/GCA_937924705.1_SRR6231150_bin.55_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Flavobacterium sp." ], "sample_taxid": [ "165435" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.065 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.15, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3759852", "Number of Sequences": "297", "Longest Sequences (bp)": "87949", "N50 (bp)": "21926", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.1", "Number of CDSs": "3241", "Average Protein Length": "314.8", "Coding Ratio (%)": "81.4", "Number of rRNAs": "1", "Number of tRNAs": "31", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium succinicans", "strain": "strain=LMG 10402", "accession": "GCA_000611675.1", "taxid": 29536, "species_taxid": 29536, "relation_to_type": "type", "validated": true, "ani": 86.9016, "matched_fragments": 720, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium succinicans", "strain": "strain=DSM 4002", "accession": "GCA_900114945.1", "taxid": 29536, "species_taxid": 29536, "relation_to_type": "type", "validated": true, "ani": 86.8278, "matched_fragments": 725, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium turcicum", "strain": "strain=F-339", "accession": "GCA_011365745.1", "taxid": 2764718, "species_taxid": 2764718, "relation_to_type": "type", "validated": true, "ani": 78.7753, "matched_fragments": 308, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquicola", "strain": "strain=DSM 100880", "accession": "GCA_003385115.1", "taxid": 1682742, "species_taxid": 1682742, "relation_to_type": "type", "validated": true, "ani": 78.6517, "matched_fragments": 332, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquariorum", "strain": "strain=IMCC34762", "accession": "GCA_003254745.1", "taxid": 2217670, "species_taxid": 2217670, "relation_to_type": "type", "validated": true, "ani": 78.544, "matched_fragments": 377, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 78.5238, "matched_fragments": 314, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 78.46, "matched_fragments": 315, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluvii", "strain": "strain=DSM 19978", "accession": "GCA_900129545.1", "taxid": 468056, "species_taxid": 468056, "relation_to_type": "type", "validated": true, "ani": 78.4445, "matched_fragments": 296, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=DSM 12611", "accession": "GCA_000832125.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 78.4167, "matched_fragments": 322, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sufflavum", "strain": "strain=BBQ-12", "accession": "GCA_004016525.1", "taxid": 1921138, "species_taxid": 1921138, "relation_to_type": "type", "validated": true, "ani": 78.4044, "matched_fragments": 316, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=ATCC 51468", "accession": "GCA_002217315.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 78.4021, "matched_fragments": 329, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 78.3957, "matched_fragments": 314, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=NCTC13514", "accession": "GCA_900450525.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 78.3914, "matched_fragments": 326, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium geliluteum", "strain": "strain=P7388", "accession": "GCA_017948595.1", "taxid": 2816120, "species_taxid": 2816120, "relation_to_type": "type", "validated": true, "ani": 78.3853, "matched_fragments": 302, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium palustre", "strain": "strain=CGMCC 1.12811", "accession": "GCA_014639535.1", "taxid": 1476463, "species_taxid": 1476463, "relation_to_type": "type", "validated": true, "ani": 78.3506, "matched_fragments": 305, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 78.3312, "matched_fragments": 301, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium granuli", "strain": "strain=DSM 17797", "accession": "GCA_003003155.1", "taxid": 280093, "species_taxid": 280093, "relation_to_type": "type", "validated": true, "ani": 78.2351, "matched_fragments": 300, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium commune", "strain": "strain=PK15", "accession": "GCA_001857965.1", "taxid": 1306519, "species_taxid": 1306519, "relation_to_type": "type", "validated": true, "ani": 78.1985, "matched_fragments": 302, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 78.1971, "matched_fragments": 317, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_009674815.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 78.1956, "matched_fragments": 324, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hercynium", "strain": "strain=DSM 18292", "accession": "GCA_002217285.1", "taxid": 387094, "species_taxid": 387094, "relation_to_type": "type", "validated": true, "ani": 78.1073, "matched_fragments": 279, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nackdongense", "strain": "strain=GS13", "accession": "GCA_004355225.1", "taxid": 2547394, "species_taxid": 2547394, "relation_to_type": "type", "validated": true, "ani": 78.1029, "matched_fragments": 314, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fryxellicola", "strain": "strain=DSM 16209", "accession": "GCA_001637185.1", "taxid": 249352, "species_taxid": 249352, "relation_to_type": "type", "validated": true, "ani": 78.0842, "matched_fragments": 298, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.0796, "matched_fragments": 302, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.1304, "matched_fragments": 121, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium davisii", "strain": "strain=90-106", "accession": "GCA_019565505.1", "taxid": 2906077, "species_taxid": 2906077, "relation_to_type": "type", "validated": true, "ani": 76.9755, "matched_fragments": 123, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 76.6797, "matched_fragments": 143, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.15, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017997335.1", "gtdb_species": "s__Flavobacterium sp017997335", "ani": 98.7554, "matched_fragments": 671, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_902506345.1", "gtdb_species": "s__Flavobacterium sp902506345", "ani": 94.351, "matched_fragments": 854, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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