{
    "type": "genome",
    "identifier": "GCA_937925535.1",
    "organism": "uncultured Rothia sp.",
    "title": "uncultured Rothia sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_937925535.1",
        "bioproject": "PRJEB51072",
        "biosample": "SAMEA14081606",
        "wgs_master": "CALALT000000000.1",
        "refseq_category": "na",
        "taxid": "316088",
        "species_taxid": "316088",
        "organism_name": "uncultured Rothia sp.",
        "infraspecific_name": "",
        "isolate": "ERR1332622_bin.41_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/10",
        "asm_name": "ERR1332622_bin.41_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/925/535/GCA_937925535.1_ERR1332622_bin.41_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-10",
    "dateModified": "2023-01-10",
    "datePublished": "2023-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Rothia sp."
        ],
        "sample_taxid": [
            "316088"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.630 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2213770",
        "Number of Sequences": "59",
        "Longest Sequences (bp)": "341655",
        "N50 (bp)": "83192",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.6",
        "Number of CDSs": "1734",
        "Average Protein Length": "349.3",
        "Coding Ratio (%)": "82.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rothia mucilaginosa",
                "strain": "strain=ATCC 25296",
                "accession": "GCA_000175615.1",
                "taxid": 43675,
                "species_taxid": 43675,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 95.1208,
                "matched_fragments": 662,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=NCTC10917",
                "accession": "GCA_900455895.1",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1514,
                "matched_fragments": 201,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=ATCC 17931",
                "accession": "GCA_000164695.2",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1024,
                "matched_fragments": 202,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia aeria",
                "strain": "strain=FDAARGOS_1137",
                "accession": "GCA_016726365.1",
                "taxid": 172042,
                "species_taxid": 172042,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0569,
                "matched_fragments": 260,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia terrae",
                "strain": "strain=LMG 23708",
                "accession": "GCA_012396615.1",
                "taxid": 396015,
                "species_taxid": 396015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.19,
                "matched_fragments": 139,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia aerolata",
                "strain": "strain=CCM 8669",
                "accession": "GCA_014635585.1",
                "taxid": 1812262,
                "species_taxid": 1812262,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1329,
                "matched_fragments": 188,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter pullicola",
                "strain": "strain=Sa2BUA2",
                "accession": "GCA_014836875.1",
                "taxid": 2762224,
                "species_taxid": 2762224,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1345,
                "matched_fragments": 73,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria rhizophila",
                "strain": "strain=TA68",
                "accession": "GCA_003667225.1",
                "taxid": 72000,
                "species_taxid": 72000,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9729,
                "matched_fragments": 97,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria palustris",
                "strain": "strain=TAGA27",
                "accession": "GCA_016907795.1",
                "taxid": 71999,
                "species_taxid": 71999,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9198,
                "matched_fragments": 92,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glutamicibacter mysorens",
                "strain": "strain=NBRC 103060",
                "accession": "GCA_001552115.1",
                "taxid": 257984,
                "species_taxid": 257984,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9009,
                "matched_fragments": 65,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sinomonas notoginsengisoli",
                "strain": "strain=KCTC 29237",
                "accession": "GCA_021554725.1",
                "taxid": 1457311,
                "species_taxid": 1457311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7584,
                "matched_fragments": 56,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zhihengliuella flava",
                "strain": "strain=DSM 26152",
                "accession": "GCA_015751895.1",
                "taxid": 1285193,
                "species_taxid": 1285193,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7407,
                "matched_fragments": 62,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nesterenkonia sandarakina",
                "strain": "strain=DSM 15664",
                "accession": "GCA_013410215.1",
                "taxid": 272918,
                "species_taxid": 272918,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0986,
                "matched_fragments": 57,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_015265375.1",
                "gtdb_species": "s__Rothia sp015265375",
                "ani": 95.2985,
                "matched_fragments": 611,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.30",
                "min_intra_species_ani": "95.30",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_000175615.1",
                "gtdb_species": "s__Rothia mucilaginosa",
                "ani": 95.1208,
                "matched_fragments": 662,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.99",
                "min_intra_species_ani": "95.33",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 44,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_001808955.1",
                "gtdb_species": "s__Rothia sp001808955",
                "ani": 94.4275,
                "matched_fragments": 658,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.04",
                "min_intra_species_ani": "95.53",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCF_001548235.1",
                "gtdb_species": "s__Rothia mucilaginosa_B",
                "ani": 94.2382,
                "matched_fragments": 672,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.72",
                "min_intra_species_ani": "95.51",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001061665.1",
                "gtdb_species": "s__Rothia mucilaginosa_A",
                "ani": 89.0139,
                "matched_fragments": 593,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_901875305.1",
                "gtdb_species": "s__Rothia sp902373285",
                "ani": 87.9934,
                "matched_fragments": 616,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.53",
                "min_intra_species_ani": "97.34",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.118,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 32.333,
        "optimum_tmp": 35.125,
        "optimum_ph": 7.25,
        "genome_size": 2518901.087,
        "gc_content": 56.692,
        "coding_genes": 2232.511,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 48.083,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.125,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.875,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.6,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.4,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Micrococcaceae",
        "g__Rothia",
        "s__Rothia sp001836735"
    ],
    "_genome_taxon": [
        "uncultured",
        "Rothia",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Micrococcaceae",
        "g__Rothia",
        "s__Rothia sp001836735",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Micrococcaceae",
        "Rothia",
        "Rothia",
        "sp001836735"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}