{ "type": "genome", "identifier": "GCA_937925545.1", "organism": "uncultured Planctomycetaceae bacterium", "title": "uncultured Planctomycetaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937925545.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14082570", "wgs_master": "CALALR000000000.1", "refseq_category": "na", "taxid": "100233", "species_taxid": "100233", "organism_name": "uncultured Planctomycetaceae bacterium", "infraspecific_name": "", "isolate": "SRR7515930_bin.28_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "SRR7515930_bin.28_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/925/545/GCA_937925545.1_SRR7515930_bin.28_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Planctomycetaceae bacterium" ], "sample_taxid": [ "100233" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Saudi Arabia" ], "sample_host_location_id": [], "data_size": "1.662 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 6.02, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5783604", "Number of Sequences": "44", "Longest Sequences (bp)": "927059", "N50 (bp)": "288949", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.5", "Number of CDSs": "4785", "Average Protein Length": "346.2", "Coding Ratio (%)": "85.9", "Number of rRNAs": "1", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bythopirellula goksoeyrii", "strain": "strain=Pr1d", "accession": "GCA_008065115.1", "taxid": 1400387, "species_taxid": 1400387, "relation_to_type": "type", "validated": true, "ani": 77.7551, "matched_fragments": 505, "total_fragments": 1907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bythopirellula polymerisocia", "strain": "strain=Pla144", "accession": "GCA_007860015.1", "taxid": 2528003, "species_taxid": 2528003, "relation_to_type": "type", "validated": true, "ani": 77.5561, 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95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 6.02, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008065115.1", "gtdb_species": "s__Bythopirellula goksoyri", "ani": 77.7361, "matched_fragments": 508, "total_fragments": 1907, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Bythopirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007860015.1", "gtdb_species": "s__Bythopirellula polymerisocia", "ani": 77.5524, "matched_fragments": 504, "total_fragments": 1907, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Bythopirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003576855.1", "gtdb_species": "s__Lacipirellula sp003576855", "ani": 76.041, "matched_fragments": 63, "total_fragments": 1907, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Lacipirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013822725.1", "gtdb_species": "s__Lacipirellula sp013822725", "ani": 75.9781, "matched_fragments": 56, "total_fragments": 1907, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Lacipirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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