{ "type": "genome", "identifier": "GCA_937925595.1", "organism": "uncultured Demequina sp.", "title": "uncultured Demequina sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937925595.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14082003", "wgs_master": "CALALQ000000000.1", "refseq_category": "na", "taxid": "693499", "species_taxid": "693499", "organism_name": "uncultured Demequina sp.", "infraspecific_name": "", "isolate": "SRR4028131_bin.155_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "SRR4028131_bin.155_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/925/595/GCA_937925595.1_SRR4028131_bin.155_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Demequina sp." ], "sample_taxid": [ "693499" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.440 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5161018", "Number of Sequences": "509", "Longest Sequences (bp)": "92228", "N50 (bp)": "18123", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "4803", "Average Protein Length": "287.1", "Coding Ratio (%)": "80.1", "Number of rRNAs": "1", "Number of tRNAs": "93", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Demequina maris", "strain": "strain=NBRC 109392", "accession": "GCA_000971155.1", "taxid": 1638982, "species_taxid": 1638982, "relation_to_type": "type", "validated": true, "ani": 79.5804, "matched_fragments": 339, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina mangrovi", "strain": "strain=DSM 24868", "accession": "GCA_900109245.1", "taxid": 1043493, "species_taxid": 1043493, "relation_to_type": "type", "validated": true, "ani": 79.5473, "matched_fragments": 321, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina mangrovi", "strain": "strain=NBRC 105856", "accession": "GCA_000759715.1", "taxid": 1043493, "species_taxid": 1043493, "relation_to_type": "type", "validated": true, "ani": 79.5285, "matched_fragments": 325, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina soli", "strain": "strain=NBRC 109394", "accession": "GCA_000971195.1", "taxid": 1638987, "species_taxid": 1638987, "relation_to_type": "type", "validated": true, "ani": 79.5086, "matched_fragments": 332, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina subtropica", "strain": "strain=NBRC 109396", "accession": "GCA_000971235.1", "taxid": 1638989, "species_taxid": 1638989, "relation_to_type": "type", "validated": true, "ani": 79.4347, "matched_fragments": 320, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina iriomotensis", "strain": "strain=NBRC 109399", "accession": "GCA_000971395.1", "taxid": 1536641, "species_taxid": 1536641, "relation_to_type": "type", "validated": true, "ani": 79.308, "matched_fragments": 329, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina phytophila", "strain": "strain=NBRC 109391", "accession": "GCA_000971135.1", "taxid": 1638981, "species_taxid": 1638981, "relation_to_type": "type", "validated": true, "ani": 79.2925, "matched_fragments": 351, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina rhizosphaerae", "strain": "strain=NBRC 109397", "accession": "GCA_000971255.1", "taxid": 1638985, "species_taxid": 1638985, "relation_to_type": "type", "validated": true, "ani": 79.2343, "matched_fragments": 361, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina pelophila", "strain": "strain=NBRC 109393", "accession": "GCA_000971175.1", "taxid": 1638984, "species_taxid": 1638984, "relation_to_type": "type", "validated": true, "ani": 79.1777, "matched_fragments": 308, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina silvatica", "strain": "strain=NBRC 109395", "accession": "GCA_000971215.1", "taxid": 1638988, "species_taxid": 1638988, "relation_to_type": "type", "validated": true, "ani": 79.1252, "matched_fragments": 356, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina gelatinilytica", "strain": "strain=NBRC 109390", "accession": "GCA_000971115.1", "taxid": 1638980, "species_taxid": 1638980, "relation_to_type": "type", "validated": true, "ani": 78.9058, "matched_fragments": 337, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina activiva", "strain": "strain=NBRC 110675", "accession": "GCA_016862815.1", "taxid": 1582364, "species_taxid": 1582364, "relation_to_type": "type", "validated": true, "ani": 78.8536, "matched_fragments": 303, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina salsinemoris", "strain": "strain=NBRC 105323", "accession": "GCA_000974805.1", "taxid": 577470, "species_taxid": 577470, "relation_to_type": "type", "validated": true, "ani": 78.659, "matched_fragments": 312, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina lutea", "strain": "strain=DSM 19970", "accession": "GCA_013409005.1", "taxid": 431489, "species_taxid": 431489, "relation_to_type": "type", "validated": true, "ani": 78.0305, "matched_fragments": 213, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium proteolyticum", "strain": "strain=CECT 8356", "accession": "GCA_014192415.1", "taxid": 1572644, "species_taxid": 1572644, "relation_to_type": "type", "validated": true, "ani": 77.1106, "matched_fragments": 149, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium testaceum", "strain": "strain=NBRC 12675", "accession": "GCA_006539145.1", "taxid": 2033, "species_taxid": 2033, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9159, "matched_fragments": 126, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 76.9106, "matched_fragments": 240, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 76.9067, "matched_fragments": 206, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 76.8838, "matched_fragments": 219, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium enclense", "strain": "strain=NIO-1002", "accession": "GCA_001456955.1", "taxid": 993073, "species_taxid": 993073, "relation_to_type": "type", "validated": true, "ani": 76.8649, "matched_fragments": 152, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium enclense", "strain": "strain=NIO-1002", "accession": "GCA_900096885.1", "taxid": 993073, "species_taxid": 993073, "relation_to_type": "type", "validated": true, "ani": 76.8649, "matched_fragments": 152, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hatanonis", "strain": "strain=JCM14558", "accession": "GCA_008017415.1", "taxid": 404366, "species_taxid": 404366, "relation_to_type": "type", "validated": true, "ani": 76.798, "matched_fragments": 119, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus jejuensis", "strain": "strain=NRRL B-24460", "accession": "GCA_000720925.1", "taxid": 367299, "species_taxid": 367299, "relation_to_type": "type", "validated": true, "ani": 76.6694, "matched_fragments": 168, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella gossypii", "strain": "strain=N2-46", "accession": "GCA_019947135.1", "taxid": 2800820, "species_taxid": 2800820, "relation_to_type": "type", "validated": true, "ani": 76.4469, "matched_fragments": 163, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella aeris", "strain": "strain=CIP 111667", "accession": "GCA_902703175.1", "taxid": 2761496, "species_taxid": 2761496, "relation_to_type": "type", "validated": true, "ani": 76.4223, "matched_fragments": 158, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000971155.1", "gtdb_species": "s__Demequina maris", "ani": 79.5656, "matched_fragments": 340, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Demequinaceae;g__Demequina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "96.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000971195.1", "gtdb_species": "s__Demequina soli", "ani": 79.493, "matched_fragments": 333, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Demequinaceae;g__Demequina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000971235.1", "gtdb_species": "s__Demequina subtropica", "ani": 79.4495, "matched_fragments": 319, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Demequinaceae;g__Demequina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000971395.1", "gtdb_species": "s__Demequina iriomotensis", "ani": 79.3088, "matched_fragments": 329, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Demequinaceae;g__Demequina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002090155.1", "gtdb_species": "s__Demequina sp002090155", "ani": 79.2871, "matched_fragments": 324, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Demequinaceae;g__Demequina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000971255.1", "gtdb_species": "s__Demequina rhizosphaerae", "ani": 79.2343, "matched_fragments": 361, "total_fragments": 1451, "gtdb_taxonomy": 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