{
    "type": "genome",
    "identifier": "GCA_937925855.1",
    "organism": "uncultured Thiotrichaceae bacterium",
    "title": "uncultured Thiotrichaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "marine college, shandong university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_937925855.1",
        "bioproject": "PRJEB50838",
        "biosample": "SAMEA14073180",
        "wgs_master": "CALAMO000000000.1",
        "refseq_category": "na",
        "taxid": "298394",
        "species_taxid": "298394",
        "organism_name": "uncultured Thiotrichaceae bacterium",
        "infraspecific_name": "",
        "isolate": "H4_Bin_Bin_186_1_1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/28",
        "asm_name": "H4_Bin_Bin_186_1_1",
        "submitter": "marine college, shandong university",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/925/855/GCA_937925855.1_H4_Bin_Bin_186_1_1",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-28",
    "dateModified": "2023-01-28",
    "datePublished": "2023-01-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Thiotrichaceae bacterium"
        ],
        "sample_taxid": [
            "298394"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.023 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3566792",
        "Number of Sequences": "64",
        "Longest Sequences (bp)": "275350",
        "N50 (bp)": "96508",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.3",
        "Number of CDSs": "3259",
        "Average Protein Length": "322.3",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "8"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002746895.1",
                "gtdb_species": "s__Thiolinea nivea_A",
                "ani": 77.2236,
                "matched_fragments": 74,
                "total_fragments": 1160,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiolinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902727945.1",
                "gtdb_species": "s__Thiolinea sp902727945",
                "ani": 77.0826,
                "matched_fragments": 68,
                "total_fragments": 1160,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiolinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.373,
        "cell_length": 0.811,
        "doubling_h": null,
        "growth_tmp": 23.818,
        "optimum_tmp": 22.785,
        "optimum_ph": 7.733,
        "genome_size": 4542019.265,
        "gc_content": 45.304,
        "coding_genes": 3675.833,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.25,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.6,
        "coccus_cell_shape": 0.2,
        "filament_cell_shape": 0.1,
        "coccobacillus_cell_shape": 0.1,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Thiotrichales",
        "f__Thiotrichaceae",
        "g__Thiolinea",
        "s__Thiolinea sp937925855"
    ],
    "_genome_taxon": [
        "uncultured",
        "Thiotrichaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Thiotrichales",
        "f__Thiotrichaceae",
        "g__Thiolinea",
        "s__Thiolinea sp937925855",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Thiotrichales",
        "Thiotrichaceae",
        "Thiolinea",
        "Thiolinea",
        "sp937925855"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        },
        {
            "id": "MEO_0000419",
            "label": "plant body associated"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}