{ "type": "genome", "identifier": "GCA_937944065.1", "organism": "uncultured Amylibacter sp.", "title": "uncultured Amylibacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937944065.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14073403", "wgs_master": "CALDZS000000000.1", "refseq_category": "na", "taxid": "1617807", "species_taxid": "1617807", "organism_name": "uncultured Amylibacter sp.", "infraspecific_name": "", "isolate": "L3_Bin_Bin_171_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/25", "asm_name": "L3_Bin_Bin_171_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/944/065/GCA_937944065.1_L3_Bin_Bin_171_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-25", "dateModified": "2023-01-25", "datePublished": "2023-01-25", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Amylibacter sp." ], "sample_taxid": [ "1617807" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.696 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 63.26, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2417865", "Number of Sequences": "365", "Longest Sequences (bp)": "39587", "N50 (bp)": "7589", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.5", "Number of CDSs": "2120", "Average Protein Length": "288.5", "Coding Ratio (%)": "75.9", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amylibacter ulvae", "strain": "strain=KCTC 32465", "accession": "GCA_014652655.1", "taxid": 1651968, "species_taxid": 1651968, "relation_to_type": "type", "validated": true, "ani": 76.8791, "matched_fragments": 108, "total_fragments": 629, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amylibacter kogurei", "strain": "strain=4G11", "accession": "GCA_002742285.1", "taxid": 1889778, "species_taxid": 1889778, "relation_to_type": "type", "validated": true, "ani": 76.7726, "matched_fragments": 110, "total_fragments": 629, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 63.26, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014652655.1", "gtdb_species": "s__Amylibacter ulvae", "ani": 76.8631, "matched_fragments": 107, "total_fragments": 629, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Amylibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009184395.1", "gtdb_species": "s__Amylibacter sp009184395", "ani": 76.7917, "matched_fragments": 60, "total_fragments": 629, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Amylibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002742285.1", "gtdb_species": "s__Amylibacter kogurei", "ani": 76.7726, "matched_fragments": 110, "total_fragments": 629, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Amylibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhodobacterales", "f__Rhodobacteraceae", "g__Amylibacter", "s__Amylibacter sp937944065" ], "_genome_taxon": [ "uncultured", "Amylibacter", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhodobacterales", "f__Rhodobacteraceae", "g__Amylibacter", "s__Amylibacter sp937944065", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Rhodobacterales", "Rhodobacteraceae", "Amylibacter", "Amylibacter", "sp937944065" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" }, { "id": "MEO_0000419", "label": "plant body associated" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }