{ "type": "genome", "identifier": "GCA_937944425.1", "organism": "Stenotrophomonas maltophilia", "title": "Stenotrophomonas maltophilia", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937944425.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14072989", "wgs_master": "CALDYS000000000.1", "refseq_category": "na", "taxid": "40324", "species_taxid": "40324", "organism_name": "Stenotrophomonas maltophilia", "infraspecific_name": "", "isolate": "H1_Bin_Bin_46_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/30", "asm_name": "H1_Bin_Bin_46_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/944/425/GCA_937944425.1_H1_Bin_Bin_46_1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-30", "dateModified": "2023-01-30", "datePublished": "2023-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Stenotrophomonas maltophilia" ], "sample_taxid": [ "40324" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.288 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4684031", "Number of Sequences": "193", "Longest Sequences (bp)": "147282", "N50 (bp)": "38931", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.4", "Number of CDSs": "4313", "Average Protein Length": "318.7", "Coding Ratio (%)": "88.0", "Number of rRNAs": "0", "Number of tRNAs": "71", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=NCTC10257", "accession": "GCA_900186865.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 94.0071, "matched_fragments": 1286, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=NBRC 14161", "accession": "GCA_001591205.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 93.9446, "matched_fragments": 1245, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=ATCC 13637", "accession": "GCA_001997185.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 93.9148, "matched_fragments": 1242, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=MTCC 434", "accession": "GCA_000597745.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 93.8514, "matched_fragments": 1184, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] hibiscicola", "strain": "strain=ATCC 19867", "accession": "GCA_000382065.1", "taxid": 86189, "species_taxid": 86189, "relation_to_type": "type", "validated": true, "ani": 92.0016, "matched_fragments": 1194, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas sepilia", "strain": "strain=SM16975", "accession": "GCA_003244875.1", "taxid": 2860290, "species_taxid": 2860290, "relation_to_type": "type", "validated": true, "ani": 91.4223, "matched_fragments": 1166, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pavanii", "strain": "strain=DSM 25135", "accession": "GCA_001431565.1", "taxid": 487698, "species_taxid": 487698, "relation_to_type": "type", "validated": true, "ani": 91.2803, "matched_fragments": 1130, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pavanii", "strain": "strain=LMG 25348", "accession": "GCA_900101175.1", "taxid": 487698, "species_taxid": 487698, "relation_to_type": "type", "validated": true, "ani": 91.205, "matched_fragments": 1176, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pennii", "strain": "strain=Sa5BUN4", "accession": "GCA_014836545.1", "taxid": 2762239, 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