{ "type": "genome", "identifier": "GCA_937945085.1", "organism": "Cronobacter sakazakii", "title": "Cronobacter sakazakii", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937945085.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14085600", "wgs_master": "CALFAT000000000.1", "refseq_category": "na", "taxid": "28141", "species_taxid": "28141", "organism_name": "Cronobacter sakazakii", "infraspecific_name": "", "isolate": "SRR2047620_bin.39_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "SRR2047620_bin.39_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/945/085/GCA_937945085.1_SRR2047620_bin.39_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Cronobacter sakazakii" ], "sample_taxid": [ "28141" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.332 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.68, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4695220", "Number of Sequences": "118", "Longest Sequences (bp)": "256095", "N50 (bp)": "70412", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.8", "Number of CDSs": "4382", "Average Protein Length": "307.4", "Coding Ratio (%)": "86.1", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_001971035.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 97.8905, "matched_fragments": 1186, "total_fragments": 1506, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=NBRC 102416", "accession": "GCA_000684935.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 97.8859, "matched_fragments": 1273, "total_fragments": 1506, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=FDAARGOS_927", "accession": "GCA_016103025.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 97.8176, "matched_fragments": 1304, "total_fragments": 1506, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_000982825.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 97.7861, "matched_fragments": 1304, "total_fragments": 1506, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_001277215.2", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 94.7944, "matched_fragments": 1284, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_000409305.1", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 94.7746, "matched_fragments": 1253, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae subsp. quasipneumoniae", "strain": "strain=01A030T", "accession": "GCA_020525925.1", "taxid": 1667327, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 81.6505, "matched_fragments": 757, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae", "strain": "strain=FDAARGOS_1503", "accession": "GCA_020099175.1", "taxid": 1463165, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 81.6363, "matched_fragments": 763, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae", "strain": "strain=DSM 28211", "accession": "GCA_020115515.1", "taxid": 1463165, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 81.5978, "matched_fragments": 749, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae subsp. similipneumoniae", "strain": "strain=07A044T", "accession": "GCA_020525685.1", "taxid": 1463164, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 81.5258, "matched_fragments": 763, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae subsp. similipneumoniae", "strain": "strain=07A044", "accession": "GCA_000613225.1", "taxid": 1463164, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 81.4959, "matched_fragments": 754, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.3666, "matched_fragments": 820, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.0448, "matched_fragments": 802, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 80.9182, "matched_fragments": 809, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", 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