{
    "type": "genome",
    "identifier": "GCA_937949565.1",
    "organism": "uncultured Nitrospira sp.",
    "title": "uncultured Nitrospira sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "marine college, shandong university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_937949565.1",
        "bioproject": "PRJEB50838",
        "biosample": "SAMEA14073611",
        "wgs_master": "CALEDS000000000.1",
        "refseq_category": "na",
        "taxid": "157176",
        "species_taxid": "157176",
        "organism_name": "uncultured Nitrospira sp.",
        "infraspecific_name": "",
        "isolate": "N1_Bin_METABAT__15_1_1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/25",
        "asm_name": "N1_Bin_METABAT__15_1_1",
        "submitter": "marine college, shandong university",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/949/565/GCA_937949565.1_N1_Bin_METABAT_15_1_1",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-25",
    "dateModified": "2023-01-25",
    "datePublished": "2023-01-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Nitrospira sp."
        ],
        "sample_taxid": [
            "157176"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.773 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2701515",
        "Number of Sequences": "49",
        "Longest Sequences (bp)": "206953",
        "N50 (bp)": "96589",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.6",
        "Number of CDSs": "2542",
        "Average Protein Length": "304.1",
        "Coding Ratio (%)": "85.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrospira moscoviensis",
                "strain": "strain=NSP M-1",
                "accession": "GCA_001273775.1",
                "taxid": 42253,
                "species_taxid": 42253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8953,
                "matched_fragments": 154,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001458695.1",
                "gtdb_species": "s__Nitrospira_F inopinata",
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                "matched_fragments": 722,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011331925.1",
                "gtdb_species": "s__Nitrospira_F sp011331925",
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                "matched_fragments": 105,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018242765.1",
                "gtdb_species": "s__Nitrospira_F sp018242765",
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                "matched_fragments": 87,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "98.34",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001273775.1",
                "gtdb_species": "s__Nitrospira_E moscoviensis",
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                "matched_fragments": 154,
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                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002451055.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_002083565.1",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001805245.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__2-02-FULL-62-14",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
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                "status": "-"
            },
            {
                "accession": "GCA_005239475.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Palsa-1315",
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                "mean_intra_species_ani": "95.15",
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            },
            {
                "accession": "GCA_015903995.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_F",
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            },
            {
                "accession": "GCA_002420105.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_C",
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            {
                "accession": "GCA_014055525.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "growth_tmp": null,
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        "coding_genes": 3920.25,
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        "mesophilic_range_tmp": 1.0,
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    "_gtdb_taxon": [
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        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__Nitrospiraceae",
        "g__Nitrospira_D",
        "s__Nitrospira_D sp024330965"
    ],
    "_genome_taxon": [
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        "Nitrospira",
        "sp.",
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__Nitrospiraceae",
        "g__Nitrospira_D",
        "s__Nitrospira_D sp024330965",
        "Bacteria",
        "Nitrospirota",
        "Nitrospiria",
        "Nitrospirales",
        "Nitrospiraceae",
        "Nitrospira",
        "D",
        "Nitrospira",
        "D",
        "sp024330965"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}