{ "type": "genome", "identifier": "GCA_937949575.1", "organism": "uncultured Prevotella sp.", "title": "uncultured Prevotella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937949575.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14085860", "wgs_master": "CALEDO000000000.1", "refseq_category": "na", "taxid": "159272", "species_taxid": "159272", "organism_name": "uncultured Prevotella sp.", "infraspecific_name": "", "isolate": "SRR5558198_bin.37_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "SRR5558198_bin.37_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/949/575/GCA_937949575.1_SRR5558198_bin.37_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Prevotella sp." ], "sample_taxid": [ "159272" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.884 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3074202", "Number of Sequences": "108", "Longest Sequences (bp)": "125570", "N50 (bp)": "50738", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.1", "Number of CDSs": "2366", "Average Protein Length": "366.8", "Coding Ratio (%)": "84.7", "Number of rRNAs": "1", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8508, "matched_fragments": 374, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella hominis", "strain": "strain=BCRC 81118", "accession": "GCA_004535825.1", "taxid": 2518605, "species_taxid": 2518605, "relation_to_type": "type", "validated": true, "ani": 79.3166, "matched_fragments": 143, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pectinovora", "strain": "strain=P4-76", "accession": "GCA_000834015.1", "taxid": 1602169, "species_taxid": 1602169, "relation_to_type": "type", "validated": true, "ani": 79.1943, "matched_fragments": 188, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 79.1117, "matched_fragments": 177, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_009495405.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6764, "matched_fragments": 154, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_000157935.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6099, "matched_fragments": 154, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_025151535.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5891, "matched_fragments": 159, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lascolaii", "strain": "strain=khD1", "accession": "GCA_900079775.1", "taxid": 1776379, "species_taxid": 1776379, "relation_to_type": "type", "validated": true, "ani": 78.2882, "matched_fragments": 153, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 77.2715, "matched_fragments": 103, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 77.1991, "matched_fragments": 115, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ruminicola", "strain": "strain=ATCC 19189", "accession": "GCA_900108375.1", "taxid": 839, "species_taxid": 839, "relation_to_type": "type", "validated": true, "ani": 77.0741, "matched_fragments": 107, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentalis", "strain": "strain=DSM 3688", "accession": "GCA_000242335.3", "taxid": 52227, "species_taxid": 52227, "relation_to_type": "type", "validated": true, "ani": 77.0205, "matched_fragments": 106, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=DSM 16972", "accession": "GCA_000426585.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 77.0184, "matched_fragments": 109, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella maculosa", "strain": "strain=JCM 15638", "accession": "GCA_000613965.1", "taxid": 439703, "species_taxid": 439703, "relation_to_type": "type", "validated": true, "ani": 76.9892, "matched_fragments": 55, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=JCM 13447", "accession": "GCA_000613565.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 76.9812, "matched_fragments": 107, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentalis", "strain": "strain=DSM 3688", "accession": "GCA_000220215.1", "taxid": 52227, "species_taxid": 52227, "relation_to_type": "type", "validated": true, "ani": 76.977, "matched_fragments": 110, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella mizrahii", "strain": "strain=LKV-178-WT-2A", "accession": "GCA_009695775.1", "taxid": 2606637, "species_taxid": 2606637, "relation_to_type": "type", "validated": true, "ani": 76.9327, "matched_fragments": 123, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella denticola", "strain": "strain=DSM 20614", "accession": "GCA_000421205.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 76.4336, "matched_fragments": 95, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella denticola", "strain": "strain=NCTC13067", "accession": "GCA_900454835.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 76.3814, "matched_fragments": 96, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella falsenii", "strain": "strain=JCM 15124", "accession": "GCA_000613945.1", "taxid": 515414, "species_taxid": 515414, "relation_to_type": "type", "validated": true, "ani": 76.2212, "matched_fragments": 62, "total_fragments": 971, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900544495.1", "gtdb_species": "s__Prevotella sp900544495", "ani": 100.0, "matched_fragments": 868, "total_fragments": 971, "gtdb_taxonomy": 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