{ "type": "genome", "identifier": "GCA_937950105.1", "organism": "uncultured Alphaproteobacteria bacterium", "title": "uncultured Alphaproteobacteria bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937950105.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14081766", "wgs_master": "CALFEM000000000.1", "refseq_category": "na", "taxid": "91750", "species_taxid": "91750", "organism_name": "uncultured Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "SRR3330202_bin.18_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "SRR3330202_bin.18_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/950/105/GCA_937950105.1_SRR3330202_bin.18_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Alphaproteobacteria bacterium" ], "sample_taxid": [ "91750" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Singapore" ], "sample_host_location_id": [], "data_size": "0.841 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 54.25, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3035632", "Number of Sequences": "631", "Longest Sequences (bp)": "21901", "N50 (bp)": "5738", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "2458", "Average Protein Length": "273.5", "Coding Ratio (%)": "66.4", "Number of rRNAs": "1", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hyphomicrobium zavarzinii", "strain": "strain=ZV-622", "accession": "GCA_000383415.1", "taxid": 48292, "species_taxid": 48292, "relation_to_type": "type", "validated": true, "ani": 78.1286, "matched_fragments": 212, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium album", "strain": "strain=XQ2", "accession": "GCA_009708035.1", "taxid": 2665159, "species_taxid": 2665159, "relation_to_type": "type", "validated": true, "ani": 78.1052, "matched_fragments": 226, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium nitrativorans", "strain": "strain=NL23", "accession": "GCA_000503895.1", "taxid": 1427356, "species_taxid": 1427356, "relation_to_type": "type", "validated": true, "ani": 77.6829, "matched_fragments": 158, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium sulfonivorans", "strain": "strain=S1", "accession": "GCA_013306565.1", "taxid": 121290, "species_taxid": 121290, "relation_to_type": "type", "validated": true, "ani": 77.5117, "matched_fragments": 150, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium sulfonivorans", "strain": "strain=S1", "accession": "GCA_016125985.1", "taxid": 121290, "species_taxid": 121290, "relation_to_type": "type", "validated": true, "ani": 77.5091, "matched_fragments": 151, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium denitrificans", "strain": "strain=ATCC 51888", "accession": "GCA_000143145.1", "taxid": 53399, "species_taxid": 53399, "relation_to_type": "type", "validated": true, "ani": 77.4068, "matched_fragments": 148, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 76.9994, "matched_fragments": 174, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter tagetidis", "strain": "strain=DSM 11105", "accession": "GCA_014206845.1", "taxid": 60216, "species_taxid": 60216, "relation_to_type": "type", "validated": true, "ani": 76.9982, "matched_fragments": 147, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium facile", "strain": "strain=DSM 1565", "accession": "GCA_900116175.1", "taxid": 51670, "species_taxid": 51670, "relation_to_type": "type", "validated": true, "ani": 76.9865, "matched_fragments": 132, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter tagetidis", "strain": "strain=ATCC 700314", "accession": "GCA_003667445.1", "taxid": 60216, "species_taxid": 60216, "relation_to_type": "type", "validated": true, "ani": 76.9486, "matched_fragments": 150, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 76.9303, "matched_fragments": 118, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 76.9188, "matched_fragments": 149, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas aggregata", "strain": "strain=KCTC 52919", "accession": "GCA_010500835.1", "taxid": 2047720, "species_taxid": 2047720, "relation_to_type": "type", "validated": true, "ani": 76.8976, "matched_fragments": 124, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia adipata", "strain": "strain=DSM 17808", "accession": "GCA_000423225.1", "taxid": 166954, "species_taxid": 166954, "relation_to_type": "type", "validated": true, "ani": 76.7793, "matched_fragments": 144, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 76.7642, "matched_fragments": 143, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 76.574, "matched_fragments": 154, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pleomorphomonas carboxyditropha", "strain": "strain=SVCO-16", "accession": "GCA_002770725.1", "taxid": 2023338, "species_taxid": 2023338, "relation_to_type": "type", "validated": true, "ani": 76.5479, "matched_fragments": 158, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum salsuginis", "strain": "strain=CGMCC 1.6474", "accession": "GCA_900114375.1", "taxid": 414703, "species_taxid": 414703, "relation_to_type": "type", "validated": true, "ani": 76.5115, "matched_fragments": 143, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 76.5056, "matched_fragments": 81, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium redzepovicii", "strain": "strain=18T", "accession": "GCA_019793435.1", "taxid": 2867518, "species_taxid": 2867518, "relation_to_type": "type", "validated": true, "ani": 76.4452, "matched_fragments": 99, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 76.3722, "matched_fragments": 107, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dichotomicrobium thermohalophilum", "strain": "strain=DSM 5002", "accession": "GCA_003550175.1", "taxid": 933063, "species_taxid": 933063, "relation_to_type": "type", "validated": true, "ani": 76.2943, "matched_fragments": 83, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter dioxanivorans", "strain": "strain=YN2", "accession": "GCA_016807805.1", "taxid": 2528964, "species_taxid": 2528964, "relation_to_type": "type", "validated": true, "ani": 76.287, "matched_fragments": 148, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 54.25, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016793635.1", "gtdb_species": "s__JAEUMD01 sp016793635", "ani": 79.8574, "matched_fragments": 409, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__JAEUMD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009026145.1", "gtdb_species": "s__Hyphomicrobium_A sp009026145", "ani": 78.5362, "matched_fragments": 231, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009708035.1", "gtdb_species": "s__Hyphomicrobium_A sp009708035", "ani": 78.1369, "matched_fragments": 224, "total_fragments": 690, "gtdb_taxonomy": 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