{ "type": "genome", "identifier": "GCA_937950205.1", "organism": "uncultured Slackia sp.", "title": "uncultured Slackia sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937950205.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14083377", "wgs_master": "CALFEF000000000.1", "refseq_category": "na", "taxid": "665903", "species_taxid": "665903", "organism_name": "uncultured Slackia sp.", "infraspecific_name": "", "isolate": "ERR1190888_bin.16_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "ERR1190888_bin.16_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/950/205/GCA_937950205.1_ERR1190888_bin.16_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Slackia sp." ], "sample_taxid": [ "665903" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.491 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 66.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1735309", "Number of Sequences": "365", "Longest Sequences (bp)": "38454", "N50 (bp)": "6540", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.6", "Number of CDSs": "1237", "Average Protein Length": "309.9", "Coding Ratio (%)": "66.3", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Slackia faecicanis", "strain": "strain=DSM 17537", "accession": "GCA_003725295.1", "taxid": 255723, "species_taxid": 255723, "relation_to_type": "type", "validated": true, "ani": 88.9831, "matched_fragments": 335, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia piriformis", "strain": "strain=YIT 12062", "accession": "GCA_000296445.1", "taxid": 626934, "species_taxid": 626934, "relation_to_type": "type", "validated": true, "ani": 79.6252, "matched_fragments": 212, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia equolifaciens", "strain": "strain=DSM 24851", "accession": "GCA_003725995.1", "taxid": 498718, "species_taxid": 498718, "relation_to_type": "type", "validated": true, "ani": 78.4094, "matched_fragments": 153, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter pamelaeae", "strain": "strain=7-10-1-bT", "accession": "GCA_000210055.1", "taxid": 471189, "species_taxid": 471189, "relation_to_type": "type", "validated": true, "ani": 78.1543, "matched_fragments": 125, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella sinensis", "strain": "strain=DSM 16107", "accession": "GCA_003339815.1", "taxid": 242230, "species_taxid": 242230, "relation_to_type": "type", "validated": true, "ani": 78.1415, "matched_fragments": 131, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella sinensis", "strain": "strain=DSM 16107", "accession": "GCA_003725965.1", "taxid": 242230, "species_taxid": 242230, "relation_to_type": "type", "validated": true, "ani": 78.1399, "matched_fragments": 131, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Senegalimassilia anaerobia", "strain": "strain=type strain: JC110", "accession": "GCA_000236865.1", "taxid": 1473216, "species_taxid": 1473216, "relation_to_type": "type", "validated": true, "ani": 78.0868, "matched_fragments": 101, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia isoflavoniconvertens", "strain": "strain=DSM 22006", "accession": "GCA_003725955.1", "taxid": 572010, "species_taxid": 572010, "relation_to_type": "type", "validated": true, "ani": 77.9084, "matched_fragments": 104, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=ATCC 25559", "accession": "GCA_003340105.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 77.8765, "matched_fragments": 125, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=UCSF2243", "accession": "GCA_003339945.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 77.8526, "matched_fragments": 128, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia isoflavoniconvertens", "strain": "strain=DSM 22006", "accession": "GCA_014192995.1", "taxid": 572010, "species_taxid": 572010, "relation_to_type": "type", "validated": true, "ani": 77.8523, "matched_fragments": 107, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia heliotrinireducens", "strain": "strain=NCTC11029", "accession": "GCA_900637575.1", "taxid": 84110, "species_taxid": 84110, "relation_to_type": "type", "validated": true, "ani": 77.8232, "matched_fragments": 101, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia heliotrinireducens", "strain": "strain=DSM 20476", "accession": "GCA_000023885.1", "taxid": 84110, "species_taxid": 84110, "relation_to_type": "type", "validated": true, "ani": 77.7322, "matched_fragments": 102, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 66.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900555495.1", "gtdb_species": "s__Slackia_A sp900555495", "ani": 100.0, "matched_fragments": 355, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", 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"mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000296445.1", "gtdb_species": "s__Slackia_A piriformis", "ani": 79.6252, "matched_fragments": 212, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "96.04", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900553655.1", "gtdb_species": "s__Slackia_A sp900553655", "ani": 79.2089, "matched_fragments": 135, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.69", 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