{
    "type": "genome",
    "identifier": "GCA_937968145.1",
    "organism": "uncultured Megasphaera sp.",
    "title": "uncultured Megasphaera sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_937968145.1",
        "bioproject": "PRJEB51075",
        "biosample": "SAMEA14085994",
        "wgs_master": "CALBUJ000000000.1",
        "refseq_category": "na",
        "taxid": "165188",
        "species_taxid": "165188",
        "organism_name": "uncultured Megasphaera sp.",
        "infraspecific_name": "",
        "isolate": "SRR7658643_bin.17_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/10",
        "asm_name": "SRR7658643_bin.17_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/968/145/GCA_937968145.1_SRR7658643_bin.17_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-10",
    "dateModified": "2023-01-10",
    "datePublished": "2023-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Megasphaera sp."
        ],
        "sample_taxid": [
            "165188"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Madagascar"
        ],
        "sample_host_location_id": [],
        "data_size": "0.708 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2481761",
        "Number of Sequences": "421",
        "Longest Sequences (bp)": "43030",
        "N50 (bp)": "9405",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.8",
        "Number of CDSs": "2022",
        "Average Protein Length": "319.0",
        "Coding Ratio (%)": "78.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Megasphaera elsdenii",
                "strain": "strain=DSM 20460",
                "accession": "GCA_000283495.2",
                "taxid": 907,
                "species_taxid": 907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.4183,
                "matched_fragments": 487,
                "total_fragments": 609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera elsdenii",
                "strain": "strain=ATCC 25940",
                "accession": "GCA_003010495.1",
                "taxid": 907,
                "species_taxid": 907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.299,
                "matched_fragments": 490,
                "total_fragments": 609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera massiliensis",
                "strain": "strain=NP3",
                "accession": "GCA_000455225.1",
                "taxid": 1232428,
                "species_taxid": 1232428,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.5007,
                "matched_fragments": 388,
                "total_fragments": 609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera stantonii",
                "strain": "strain=AJH120",
                "accession": "GCA_003367905.1",
                "taxid": 2144175,
                "species_taxid": 2144175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6039,
                "matched_fragments": 279,
                "total_fragments": 609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera stantonii",
                "strain": "strain=AJH120",
                "accession": "GCA_003030445.1",
                "taxid": 2144175,
                "species_taxid": 2144175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5729,
                "matched_fragments": 279,
                "total_fragments": 609,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000417505.1",
                "gtdb_species": "s__Megasphaera sp000417505",
                "ani": 94.4171,
                "matched_fragments": 482,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.18",
                "min_intra_species_ani": "97.65",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_902388315.1",
                "gtdb_species": "s__Megasphaera sp902388315",
                "ani": 91.567,
                "matched_fragments": 383,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.43",
                "min_intra_species_ani": "99.12",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003010495.1",
                "gtdb_species": "s__Megasphaera elsdenii",
                "ani": 90.3311,
                "matched_fragments": 489,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "97.55",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCA_900548635.1",
                "gtdb_species": "s__Megasphaera sp900548635",
                "ani": 86.8891,
                "matched_fragments": 354,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001546855.1",
                "gtdb_species": "s__Megasphaera sp001546855",
                "ani": 82.7569,
                "matched_fragments": 394,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_900539295.1",
                "gtdb_species": "s__Megasphaera sp900539295",
                "ani": 82.6378,
                "matched_fragments": 385,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002319965.1",
                "gtdb_species": "s__Megasphaera sp002319965",
                "ani": 82.532,
                "matched_fragments": 308,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.41",
                "min_intra_species_ani": "98.03",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.079,
        "cell_length": 0.123,
        "doubling_h": null,
        "growth_tmp": 33.166,
        "optimum_tmp": 34.28,
        "optimum_ph": 7.0,
        "genome_size": 2655872.984,
        "gc_content": 49.092,
        "coding_genes": 2438.25,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 58.666,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Veillonellales",
        "f__Megasphaeraceae",
        "g__Megasphaera",
        "s__Megasphaera sp902464195"
    ],
    "_genome_taxon": [
        "uncultured",
        "Megasphaera",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Veillonellales",
        "f__Megasphaeraceae",
        "g__Megasphaera",
        "s__Megasphaera sp902464195",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Veillonellales",
        "Megasphaeraceae",
        "Megasphaera",
        "Megasphaera",
        "sp902464195"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}