{ "type": "genome", "identifier": "GCA_937973095.1", "organism": "uncultured Microbacteriaceae bacterium", "title": "uncultured Microbacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937973095.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14082433", "wgs_master": "CALJKS000000000.1", "refseq_category": "na", "taxid": "239729", "species_taxid": "239729", "organism_name": "uncultured Microbacteriaceae bacterium", "infraspecific_name": "", "isolate": "SRR6231220_bin.40_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "SRR6231220_bin.40_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/973/095/GCA_937973095.1_SRR6231220_bin.40_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Microbacteriaceae bacterium" ], "sample_taxid": [ "239729" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.406 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 1.3, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1436745", "Number of Sequences": "396", "Longest Sequences (bp)": "24541", "N50 (bp)": "4578", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.1", "Number of CDSs": "1170", "Average Protein Length": "271.1", "Coding Ratio (%)": "66.2", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microcella putealis", "strain": "strain=CV2", "accession": "GCA_004216575.1", "taxid": 337005, "species_taxid": 337005, "relation_to_type": "type", "validated": true, "ani": 77.5384, "matched_fragments": 76, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microcella putealis", "strain": "strain=DSM 19627", "accession": "GCA_006716545.1", "taxid": 337005, "species_taxid": 337005, "relation_to_type": "type", "validated": true, "ani": 77.4572, "matched_fragments": 75, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conyzicola nivalis", "strain": "strain=CGMCC 1.12813", "accession": "GCA_014639655.1", "taxid": 1477021, "species_taxid": 1477021, "relation_to_type": "type", "validated": true, "ani": 77.1912, "matched_fragments": 60, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter larvae", "strain": "strain=KACC 19322", "accession": "GCA_008365275.1", "taxid": 2592654, "species_taxid": 2592654, "relation_to_type": "type", "validated": true, "ani": 77.1463, "matched_fragments": 72, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium commune", "strain": "strain=Re1", "accession": "GCA_014836945.1", "taxid": 2762219, "species_taxid": 2762219, "relation_to_type": "type", "validated": true, "ani": 77.0446, "matched_fragments": 56, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter zhangzhiyongii", "strain": "strain=DM1", "accession": "GCA_014775655.1", "taxid": 2768071, "species_taxid": 2768071, "relation_to_type": "type", "validated": true, "ani": 76.8264, "matched_fragments": 65, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter intestinalis", "strain": "strain=2DFWR-13", "accession": "GCA_003627075.1", "taxid": 2419774, "species_taxid": 2419774, "relation_to_type": "type", "validated": true, "ani": 76.8257, "matched_fragments": 82, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium humi", "strain": "strain=DSM 21799", "accession": "GCA_900105715.1", "taxid": 640635, "species_taxid": 640635, "relation_to_type": "type", "validated": true, "ani": 76.7834, "matched_fragments": 53, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hominis", "strain": "strain=LCDC 84-0209", "accession": "GCA_001553805.1", "taxid": 162426, "species_taxid": 162426, "relation_to_type": "type", "validated": true, "ani": 76.7757, "matched_fragments": 54, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus jejuensis", "strain": "strain=DSM 22002", "accession": "GCA_900099705.1", "taxid": 399736, "species_taxid": 399736, "relation_to_type": "type", "validated": true, "ani": 76.761, "matched_fragments": 65, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces humi", "strain": "strain=ANK073", "accession": "GCA_009720255.2", "taxid": 1766800, "species_taxid": 1766800, "relation_to_type": "type", "validated": true, "ani": 76.7102, "matched_fragments": 65, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces agglutinans", "strain": "strain=CFH 90414", "accession": "GCA_009647605.1", "taxid": 2662258, "species_taxid": 2662258, "relation_to_type": "type", "validated": true, "ani": 76.7042, "matched_fragments": 73, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus sediminis", "strain": "strain=NS18", "accession": "GCA_007923295.1", "taxid": 2599924, "species_taxid": 2599924, "relation_to_type": "type", "validated": true, "ani": 76.6161, "matched_fragments": 58, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter caricis", "strain": "strain=DSM 15933", "accession": "GCA_003044275.1", "taxid": 110936, "species_taxid": 110936, "relation_to_type": "type", "validated": true, "ani": 76.57, "matched_fragments": 68, "total_fragments": 268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter zeae", "strain": "strain=CC-MF41", "accession": "GCA_016758175.1", "taxid": 1257004, "species_taxid": 1257004, "relation_to_type": "type", 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