{ "type": "genome", "identifier": "GCA_937973685.1", "organism": "uncultured Flavobacteriales bacterium", "title": "uncultured Flavobacteriales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937973685.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14082349", "wgs_master": "CALJKJ000000000.1", "refseq_category": "na", "taxid": "213322", "species_taxid": "213322", "organism_name": "uncultured Flavobacteriales bacterium", "infraspecific_name": "", "isolate": "SRR6231166_bin.24_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR6231166_bin.24_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/973/685/GCA_937973685.1_SRR6231166_bin.24_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Flavobacteriales bacterium" ], "sample_taxid": [ "213322" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.765 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.85, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2714921", "Number of Sequences": "62", "Longest Sequences (bp)": "303445", "N50 (bp)": "75172", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.4", "Number of CDSs": "2332", "Average Protein Length": "346.9", "Coding Ratio (%)": "89.4", "Number of rRNAs": "1", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fluviicola taffensis", "strain": "strain=DSM 16823", "accession": "GCA_000194605.1", "taxid": 191579, "species_taxid": 191579, "relation_to_type": "type", "validated": true, "ani": 77.8802, "matched_fragments": 177, "total_fragments": 875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fluviicola chungangensis", "strain": "strain=MAH-3", "accession": "GCA_007558725.1", "taxid": 2597671, "species_taxid": 2597671, "relation_to_type": "type", "validated": true, "ani": 77.6673, "matched_fragments": 107, "total_fragments": 875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brumimicrobium mesophilum", "strain": "strain=JCM 14063", "accession": "GCA_003025005.1", "taxid": 392717, "species_taxid": 392717, "relation_to_type": "type", "validated": true, "ani": 76.5074, "matched_fragments": 52, "total_fragments": 875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brumimicrobium glaciale", "strain": "strain=IC156", "accession": "GCA_004152935.1", "taxid": 200475, "species_taxid": 200475, "relation_to_type": "type", "validated": true, "ani": 76.1072, "matched_fragments": 56, "total_fragments": 875, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.85, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_017983675.1", "gtdb_species": "s__Fluviicola sp017983675", "ani": 85.2599, "matched_fragments": 681, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.86", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003856375.1", "gtdb_species": "s__Fluviicola amylolytica", "ani": 78.0709, "matched_fragments": 120, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902168135.1", "gtdb_species": "s__Fluviicola sp902168135", "ani": 78.0259, "matched_fragments": 100, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000194605.1", "gtdb_species": "s__Fluviicola taffensis", "ani": 77.8802, "matched_fragments": 177, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002483265.1", "gtdb_species": "s__Fluviicola sp002483265", "ani": 77.8648, "matched_fragments": 143, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002243285.1", "gtdb_species": "s__Fluviicola riflensis", "ani": 77.7392, "matched_fragments": 91, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903899795.1", "gtdb_species": "s__CAIUKX01 sp903899795", "ani": 76.9054, "matched_fragments": 62, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__CAIUKX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016178305.1", "gtdb_species": "s__CAIUKX01 sp016178305", "ani": 76.7195, "matched_fragments": 93, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__CAIUKX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018402525.1", "gtdb_species": "s__UBA4466 sp018402525", "ani": 76.6434, "matched_fragments": 58, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA4466", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.337, "cell_length": 0.308, "doubling_h": 1.285, "growth_tmp": 26.455, "optimum_tmp": 26.685, "optimum_ph": 7.271, "genome_size": 3861663.667, "gc_content": 35.517, "coding_genes": 2961.142, "rRNA16S_genes": 3.684, "tRNA_genes": 48.763, "gram_stain": 0.0, "sporulation": 0.007, "motility": 0.372, "range_salinity": 0.615, "facultative_respiration": 0.042, "anaerobic_respiration": 0.012, "aerobic_respiration": 0.945, "mesophilic_range_tmp": 0.898, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.101, "bacillus_cell_shape": 0.982, "coccus_cell_shape": 0.005, "filament_cell_shape": 0.002, "coccobacillus_cell_shape": 0.01, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Crocinitomicaceae", "g__Fluviicola", "s__Fluviicola sp937973685" ], "_genome_taxon": [ "uncultured", "Flavobacteriales", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Crocinitomicaceae", "g__Fluviicola", "s__Fluviicola sp937973685", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Crocinitomicaceae", "Fluviicola", "Fluviicola", "sp937973685" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }