{ "type": "genome", "identifier": "GCA_937973705.1", "organism": "uncultured Lachnoclostridium sp.", "title": "uncultured Lachnoclostridium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937973705.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14085014", "wgs_master": "CALJKC000000000.1", "refseq_category": "na", "taxid": "1586779", "species_taxid": "1586779", "organism_name": "uncultured Lachnoclostridium sp.", "infraspecific_name": "", "isolate": "ERR589830_bin.32_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "ERR589830_bin.32_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/973/705/GCA_937973705.1_ERR589830_bin.32_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lachnoclostridium sp." ], "sample_taxid": [ "1586779" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.741 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 6.94, "strain_heterogeneity": 12.5, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6114762", "Number of Sequences": "110", "Longest Sequences (bp)": "231523", "N50 (bp)": "95996", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.3", "Number of CDSs": "5510", "Average Protein Length": "328.4", "Coding Ratio (%)": "88.8", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lachnoclostridium pacaense", "strain": "strain=Marseille-P3100", "accession": "GCA_900566185.1", "taxid": 1917870, "species_taxid": 1917870, "relation_to_type": "type", "validated": true, "ani": 81.4512, "matched_fragments": 392, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=FDAARGOS_1529", "accession": "GCA_020297485.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6344, "matched_fragments": 652, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=NCTC11224", "accession": "GCA_900447015.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4072, "matched_fragments": 669, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=ATCC 25537", "accession": "GCA_900113155.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "type", "validated": true, "ani": 79.9429, "matched_fragments": 641, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002959675.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 79.9415, "matched_fragments": 690, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_000154365.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 79.9304, "matched_fragments": 676, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002234575.2", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 79.9303, "matched_fragments": 682, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_025149125.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 78.1111, "matched_fragments": 393, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=DSM 2950", "accession": "GCA_000439125.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3197, "matched_fragments": 90, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=ATCC 27340", "accession": "GCA_000373885.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.2372, "matched_fragments": 90, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Murimonas intestini", "strain": "strain=DSM 26524", "accession": "GCA_024622195.1", "taxid": 1337051, "species_taxid": 1337051, "relation_to_type": "type", "validated": true, "ani": 76.1904, "matched_fragments": 89, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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